Showing : star • reset
2
votes
2
replies
7.4k
views
RNA STAR to DESeq2
deseq2 count matrix star
updated 6.8 years ago by 65k • written 6.8 years ago by • 0
1
vote
7
replies
5.4k
views
featureCounts creating fragments and high NoFeatures value
featurecounts bioconductor differential gene expression star
updated 7.3 years ago by ★ 3.6k • written 7.3 years ago by ▴ 10
0
votes
10
replies
4.8k
views
Differential expression analysis for STAR-aligned RNA-Seq data
deseq2 rnaseq STAR
updated 7.7 years ago by 42k • written 7.7 years ago by • 0
0
votes
3
replies
3.3k
views
Handling pseudogenes in RNA-seq
rna-seq pseudogenes STAR counts
updated 5.9 years ago by ★ 1.1k • written 5.9 years ago by • 0
0
votes
2
replies
3.0k
views
lncRNA annotation for featureCouns and STAR
lncRNA featureCounts STAR annotation
updated 6.0 years ago by ★ 3.6k • written 6.0 years ago by ▴ 10
0
votes
5
replies
2.9k
views
Problem Importing STAR fusion data into chimera
fusion genes chimera star
updated 9.2 years ago by • 0 • written 9.5 years ago by • 0
1
vote
5
replies
2.3k
views
Single end STAR Chimeric.out.junction fails to read with chimera::importFusionData
chimera STAR
updated 9.3 years ago by ▴ 500 • written 9.3 years ago by • 0
4
votes
7
replies
2.2k
views
RNAseq reads mapped to the gene
star featurecounts edgeR RNAseq
8.0 years ago myprogramming2016 • 0
3
votes
2
replies
2.1k
views
The optimal minMQS parameter in featureCounts for RNA-Seq quantification
RNA-Seq featureCounts STAR minMQS mapping quality score
updated 5.3 years ago by 50k • written 5.3 years ago by ▴ 20
0
votes
1
reply
2.0k
views
FeatureCounts: Low assigned reads, can I proceed? Do I need to do another pre-processing step?
LowAssignedReads STAR featureCounts
updated 17 months ago by ★ 1.4k • written 17 months ago by • 0
0
votes
1
reply
1.7k
views
using tximport with STAR transcript-quantification output
tximport deseq2 STAR
updated 4.5 years ago by 42k • written 4.5 years ago by • 0
1
vote
3
replies
1.6k
views
tximeta on STAR-aligned Salmon-quantified output
tximeta salmon STAR
updated 4.0 years ago by 42k • written 4.0 years ago by ▴ 10
1
vote
2
replies
1.5k
views
Gviz off-by-one with STAR BAM
gviz off-by-one STAR BAM coverage
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
2
votes
3
replies
1.3k
views
Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DESeq2 using tximport
STAR tximport RNASeq DESeq2
updated 4 months ago by ★ 1.4k • written 5 months ago by • 0
0
votes
0
replies
1.2k
views
STAR_how many mismatches to allow if the read length is 100 bp in RNA-seq data
star
8.4 years ago tg369 ▴ 10
2
votes
2
replies
1.2k
views
Why does total unique map not equal to library size?
htseqcounts star rnaseq
6.7 years ago Ahdee ▴ 50
0
votes
2
replies
1.1k
views
BAM file into R from Illumina
bam file STAR Illumina
updated 6.1 years ago by ▴ 10 • written 6.1 years ago by • 0
0
votes
1
reply
919
views
weired output with featurecount
featurecounts star
5.7 years ago roghaiyeh.safari • 0
0
votes
1
reply
905
views
Using STAR and DESeq2 for circRNA analysis
STAR deseq2
updated 5.2 years ago by 42k • written 5.2 years ago by • 0
0
votes
1
reply
598
views
Help for RNA sequencing analysis with DESEQ2
DESeq2 star differentiallyexpressed
updated 16 months ago by 42k • written 16 months ago by • 0
20 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
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Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
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So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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