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systemPipeR
•
reset
3
votes
2
replies
1.5k
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
3.6 years ago
appropiate
• 0
0
votes
0
replies
815
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
3.6 years ago
appropiate
• 0
0
votes
1
reply
1.3k
views
how to analysis chip-seq data
systemPipeR
updated 3.8 years ago by
dcassol
▴ 100 • written 3.8 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
4.1k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
tina
• 0
0
votes
0
replies
1.0k
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
6.5 years ago
Mr.RB
▴ 20
14
votes
10
replies
4.8k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
6.9 years ago
Deleted
▴ 70
0
votes
2
replies
1.6k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
7.1 years ago
rj.innet
• 0
0
votes
2
replies
1.6k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
7.2 years ago
rj.innet
• 0
0
votes
2
replies
1.0k
views
systemARGS not found
systempiper
7.2 years ago
kimberly.dickson
• 0
0
votes
3
replies
2.3k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 7.6 years ago by
Aaron Lun
★ 29k • written 7.6 years ago by
clarisbaby
• 0
0
votes
1
reply
1.6k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 8.1 years ago by
Thomas Girke
★ 1.7k • written 8.1 years ago by
tarun2
• 0
0
votes
2
replies
1.6k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
8.6 years ago
xuertowong
• 0
2
votes
3
replies
2.7k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 9.0 years ago by
Thomas Girke
★ 1.7k • written 9.0 years ago by
abass.conteh
• 0
1
vote
2
replies
2.4k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 9.1 years ago by
Thomas Girke
★ 1.7k • written 9.1 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
4.6k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
9.3 years ago
musa
▴ 10
0
votes
4
replies
1.9k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
9.4 years ago
A Gossner
▴ 50
0
votes
2
replies
2.1k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 9.8 years ago by
Thomas Girke
★ 1.7k • written 9.8 years ago by
setarosd
• 0
0
votes
4
replies
2.0k
views
systemPipeR with DESeq2
deseq2
systemPipeR
11.0 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
Comment: Using DESeq2 for age prediction
by
picasa1983
• 0
Thanks ! Do you have any idea how to do that ?
Answer: Using DESeq2 for age prediction
by
ATpoint
★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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shepherl
4.2k
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to
Gordon Smyth
53k
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Matej
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