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systemPipeR
•
reset
3
votes
2
replies
1.5k
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
3.5 years ago
appropiate
• 0
0
votes
0
replies
790
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
3.5 years ago
appropiate
• 0
0
votes
1
reply
1.3k
views
how to analysis chip-seq data
systemPipeR
updated 3.7 years ago by
dcassol
▴ 100 • written 3.7 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
4.0k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 4.6 years ago by
Martin Morgan
25k • written 4.6 years ago by
tina
• 0
0
votes
0
replies
994
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
6.4 years ago
Mr.RB
▴ 20
14
votes
10
replies
4.7k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
6.8 years ago
Deleted
▴ 70
0
votes
2
replies
1.6k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
6.9 years ago
rj.innet
• 0
0
votes
2
replies
1.6k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
7.0 years ago
rj.innet
• 0
0
votes
2
replies
975
views
systemARGS not found
systempiper
7.1 years ago
kimberly.dickson
• 0
0
votes
3
replies
2.3k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 7.4 years ago by
Aaron Lun
★ 29k • written 7.4 years ago by
clarisbaby
• 0
0
votes
1
reply
1.5k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 8.0 years ago by
Thomas Girke
★ 1.7k • written 8.0 years ago by
tarun2
• 0
0
votes
2
replies
1.5k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
8.5 years ago
xuertowong
• 0
2
votes
3
replies
2.6k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 8.8 years ago by
Thomas Girke
★ 1.7k • written 8.8 years ago by
abass.conteh
• 0
1
vote
2
replies
2.4k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 8.9 years ago by
Thomas Girke
★ 1.7k • written 8.9 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
4.6k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
9.2 years ago
musa
▴ 10
0
votes
4
replies
1.8k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
9.3 years ago
A Gossner
▴ 50
0
votes
2
replies
2.0k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 9.6 years ago by
Thomas Girke
★ 1.7k • written 9.6 years ago by
setarosd
• 0
0
votes
4
replies
1.9k
views
systemPipeR with DESeq2
deseq2
systemPipeR
10.9 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
James W. MacDonald
68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0
by
littlefishes20
▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
by
snijesh
▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel
by
James W. MacDonald
68k
Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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