Bioconductor SystemPipeR

Showing : systemPipeR • reset

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970

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systemPipeRdata systempipeR

2.1 years ago appropiate • 0

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502

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systemPipeRdata systemPipeR

2.1 years ago appropiate • 0

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752

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systemPipeR

updated 2.3 years ago by dcassol ▴ 100 • written 2.3 years ago by Bioinformatics ▴ 30

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3.0k

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systemPipeR Bioconductor DiffBind BiocGenerics

updated 3.2 years ago by Martin Morgan 25k • written 3.2 years ago by tina • 0

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677

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predORF systemPipeR ORF prediction

5.0 years ago Mr.RB ▴ 20

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3.7k

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systempiper

5.4 years ago Deleted ▴ 70

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1.2k

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runCommandline systemPipeR bash

5.6 years ago rj.innet • 0

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1.2k

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systemPipeR rnaseq

5.6 years ago rj.innet • 0

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670

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systempiper

5.7 years ago kimberly.dickson • 0

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1.7k

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systempiper edger rna-seq

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by clarisbaby • 0

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1.1k

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systempiper R batchjobs

updated 6.6 years ago by Thomas Girke ★ 1.7k • written 6.6 years ago by tarun2 • 0

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1.2k

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R edger systemPipeR

7.1 years ago xuertowong • 0

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2.1k

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R rnaseq tophat summarizeoverlaps systempiper

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by abass.conteh • 0

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systempiper run_edgeR

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by alexandr.gopanenko ▴ 50

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deseq2 systempiper Tutorial

7.8 years ago musa ▴ 10

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systempiper go term

7.9 years ago A Gossner ▴ 50

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1.6k

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systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 8.3 years ago by Thomas Girke ★ 1.7k • written 8.3 years ago by setarosd • 0

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deseq2 systemPipeR

9.5 years ago Ugo Borello ▴ 340

18 results • Page 1 of 1

Recent ...

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0