Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
systempipeR
•
reset
3
votes
2
replies
1.0k
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
2.3 years ago
appropiate
• 0
0
votes
0
replies
527
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
2.3 years ago
appropiate
• 0
0
votes
1
reply
802
views
how to analysis chip-seq data
systemPipeR
updated 2.5 years ago by
dcassol
▴ 100 • written 2.5 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
3.1k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 3.4 years ago by
Martin Morgan
25k • written 3.4 years ago by
tina
• 0
0
votes
0
replies
711
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.2 years ago
Mr.RB
▴ 20
14
votes
10
replies
3.8k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
5.6 years ago
Deleted
▴ 70
0
votes
2
replies
1.2k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
5.7 years ago
rj.innet
• 0
0
votes
2
replies
1.2k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
5.8 years ago
rj.innet
• 0
0
votes
2
replies
698
views
systemARGS not found
systempiper
5.9 years ago
kimberly.dickson
• 0
0
votes
3
replies
1.7k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.2 years ago by
clarisbaby
• 0
0
votes
1
reply
1.1k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 6.7 years ago by
Thomas Girke
★ 1.7k • written 6.7 years ago by
tarun2
• 0
0
votes
2
replies
1.2k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
7.3 years ago
xuertowong
• 0
2
votes
3
replies
2.1k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 7.6 years ago by
Thomas Girke
★ 1.7k • written 7.6 years ago by
abass.conteh
• 0
1
vote
2
replies
2.0k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 7.7 years ago by
Thomas Girke
★ 1.7k • written 7.7 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
3.8k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
8.0 years ago
musa
▴ 10
0
votes
4
replies
1.4k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
8.0 years ago
A Gossner
▴ 50
0
votes
2
replies
1.7k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 8.4 years ago by
Thomas Girke
★ 1.7k • written 8.4 years ago by
setarosd
• 0
0
votes
4
replies
1.6k
views
systemPipeR with DESeq2
deseq2
systemPipeR
9.7 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
Awards
• All
Popular Question
to
swbarnes2
★ 1.4k
Popular Question
to
Stephanie M. Gogarten
▴ 870
Popular Question
to
Jonathan
▴ 10
Popular Question
to
Frederico Moraes Ferreira
▴ 100
Popular Question
to
richardallenfriedmanbrooklyn
▴ 20
Locations
• All
The city by the bay,
just now
Melbourne, Australia,
1 hour ago
United Kingdom,
2 hours ago
San Diego,
3 hours ago
WEHI, Melbourne, Australia,
4 hours ago
Traffic: 369 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6