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systempipeR
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3
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1.6k
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How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
3.9 years ago
appropiate
• 0
0
votes
0
replies
877
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
3.9 years ago
appropiate
• 0
0
votes
1
reply
1.4k
views
how to analysis chip-seq data
systemPipeR
updated 4.1 years ago by
dcassol
▴ 100 • written 4.1 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
4.4k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
tina
• 0
0
votes
0
replies
1.1k
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
6.8 years ago
Mr.RB
▴ 20
14
votes
10
replies
5.0k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
7.2 years ago
Deleted
▴ 70
0
votes
2
replies
1.7k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
7.4 years ago
rj.innet
• 0
0
votes
2
replies
1.7k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
7.4 years ago
rj.innet
• 0
0
votes
2
replies
1.1k
views
systemARGS not found
systempiper
7.5 years ago
kimberly.dickson
• 0
0
votes
3
replies
2.4k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 7.9 years ago by
Aaron Lun
★ 29k • written 7.9 years ago by
clarisbaby
• 0
0
votes
1
reply
1.7k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 8.4 years ago by
Thomas Girke
★ 1.7k • written 8.4 years ago by
tarun2
• 0
0
votes
2
replies
1.7k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
8.9 years ago
xuertowong
• 0
2
votes
3
replies
2.8k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 9.3 years ago by
Thomas Girke
★ 1.7k • written 9.3 years ago by
abass.conteh
• 0
1
vote
2
replies
2.6k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 9.3 years ago by
Thomas Girke
★ 1.7k • written 9.3 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
4.8k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
9.6 years ago
musa
▴ 10
0
votes
4
replies
2.0k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
9.7 years ago
A Gossner
▴ 50
0
votes
2
replies
2.2k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 10.0 years ago by
Thomas Girke
★ 1.7k • written 10.0 years ago by
setarosd
• 0
0
votes
4
replies
2.1k
views
systemPipeR with DESeq2
deseq2
systemPipeR
11.3 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
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Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course
by
a2a2haa
• 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo
by
a2a2haa
• 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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