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systempipeR
•
reset
3
votes
2
replies
1.3k
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How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
3.0 years ago
appropiate
• 0
0
votes
0
replies
680
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
3.0 years ago
appropiate
• 0
0
votes
1
reply
1.1k
views
how to analysis chip-seq data
systemPipeR
updated 3.2 years ago by
dcassol
▴ 100 • written 3.2 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
3.7k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
tina
• 0
0
votes
0
replies
895
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.9 years ago
Mr.RB
▴ 20
14
votes
10
replies
4.3k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
6.3 years ago
Deleted
▴ 70
0
votes
2
replies
1.4k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
6.4 years ago
rj.innet
• 0
0
votes
2
replies
1.4k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
6.5 years ago
rj.innet
• 0
0
votes
2
replies
871
views
systemARGS not found
systempiper
6.6 years ago
kimberly.dickson
• 0
0
votes
3
replies
2.1k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
clarisbaby
• 0
0
votes
1
reply
1.4k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 7.5 years ago by
Thomas Girke
★ 1.7k • written 7.5 years ago by
tarun2
• 0
0
votes
2
replies
1.4k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
8.0 years ago
xuertowong
• 0
2
votes
3
replies
2.5k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 8.3 years ago by
Thomas Girke
★ 1.7k • written 8.3 years ago by
abass.conteh
• 0
1
vote
2
replies
2.3k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 8.4 years ago by
Thomas Girke
★ 1.7k • written 8.4 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
4.3k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
8.7 years ago
musa
▴ 10
0
votes
4
replies
1.7k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
8.8 years ago
A Gossner
▴ 50
0
votes
2
replies
1.9k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 9.1 years ago by
Thomas Girke
★ 1.7k • written 9.1 years ago by
setarosd
• 0
0
votes
4
replies
1.8k
views
systemPipeR with DESeq2
deseq2
systemPipeR
10.4 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: Using tximport for kallisto aligned recount2 data
by
ATpoint
★ 4.7k
recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?
Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package
by
Yao Lipu
• 0
Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!
Answer: Surprising behavior for DEXseq dispersion estimate plot?
by
Snow
• 0
Interesting adaptation of DEXseq, Elijah! Seeing those dispersion estimates makes me think about optimizing slopes, just like in [Snow Ride…
Answer: library org.Hs.eg.db failing to install
by
James W. MacDonald
68k
It should just install. ``` > library(BiocManager) Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14 ucrt) W…
Comment: Surprising behavior for DEXseq dispersion estimate plot?
by
Elijah
• 0
Thank you so much for your quick reply! I was worried if some underlying technical artifact or unusual behavior would be causing the patter…
Votes
Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
A: WGCNA sample size minimum: why?
WGCNA sample size minimum: why?
Answer: Surprising behavior for DEXseq dispersion estimate plot?
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