Bioconductor SystempipeR

Showing : systempipeR • reset

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systemPipeRdata systempipeR

2.7 years ago appropiate • 0

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636

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systemPipeRdata systemPipeR

2.7 years ago appropiate • 0

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983

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systemPipeR

updated 2.9 years ago by dcassol ▴ 100 • written 2.9 years ago by Bioinformatics ▴ 30

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3.4k

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systemPipeR Bioconductor DiffBind BiocGenerics

updated 3.8 years ago by Martin Morgan 25k • written 3.8 years ago by tina • 0

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825

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predORF systemPipeR ORF prediction

5.6 years ago Mr.RB ▴ 20

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4.1k

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systempiper

6.0 years ago Deleted ▴ 70

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runCommandline systemPipeR bash

6.1 years ago rj.innet • 0

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systemPipeR rnaseq

6.2 years ago rj.innet • 0

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803

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systempiper

6.3 years ago kimberly.dickson • 0

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systempiper edger rna-seq

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by clarisbaby • 0

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systempiper R batchjobs

updated 7.2 years ago by Thomas Girke ★ 1.7k • written 7.2 years ago by tarun2 • 0

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R edger systemPipeR

7.7 years ago xuertowong • 0

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2.4k

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R rnaseq tophat summarizeoverlaps systempiper

updated 8.0 years ago by Thomas Girke ★ 1.7k • written 8.0 years ago by abass.conteh • 0

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systempiper run_edgeR

updated 8.1 years ago by Thomas Girke ★ 1.7k • written 8.1 years ago by alexandr.gopanenko ▴ 50

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deseq2 systempiper Tutorial

8.4 years ago musa ▴ 10

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systempiper go term

8.5 years ago A Gossner ▴ 50

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systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 8.8 years ago by Thomas Girke ★ 1.7k • written 8.8 years ago by setarosd • 0

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deseq2 systemPipeR

10.1 years ago Ugo Borello ▴ 340

18 results • Page 1 of 1

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Comment: [How to construct a model.matrix ] by kyj2226 • 0

Thanks to you, I learn a lot. Many thanks, Yujin.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

thank you for your advice, I posted separate post.

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k

Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…

Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

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Answer: [How to construct a model.matrix ]

C: DESeq2 baseMean values for each sample

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta

A: Some questions for remove batch effect by using mnnCorrect

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