Bioconductor Time series

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2.4k

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deseq2 time series time course

updated 4.2 years ago by Michael Love 42k • written 4.2 years ago by bsierieb ▴ 10

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809

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scRNA-seq time series

4.3 years ago Bogdan ▴ 670

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1.0k

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deseq2 rnaseq repeated measures time series design formula

updated 4.8 years ago by Michael Love 42k • written 4.8 years ago by Dorien ▴ 10

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1000

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transcriptomics gene expression time series plant biology circadian Job

5.1 years ago dezer ▴ 10

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1.9k

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limma microarray time series DEG paired

updated 5.1 years ago by Gordon Smyth 51k • written 5.1 years ago by kawess • 0

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2.2k

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deseq2 Time Series Gene Clustering LRT ATACseq

updated 5.7 years ago by Michael Love 42k • written 5.7 years ago by kaiser.karim • 0

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1.5k

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deseq2 time series remove batch effect

5.7 years ago Nicola • 0

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3.6k

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limma design model.matrix time series splines

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by tleona3 • 0

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1.2k

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limma time series help

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by rm1238 • 0

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1.5k

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deseq2 time series multiple factor design

updated 5.9 years ago by Michael Love 42k • written 6.0 years ago by Jane • 0

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2.1k

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rna-seq time series patient limma-voom

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.2 years ago by aec ▴ 90

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3.6k

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deseq2 ruvseq spike-in time course time series

updated 6.9 years ago by davide risso ▴ 980 • written 6.9 years ago by staceyborrego ▴ 20

12 results • Page 1 of 1

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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