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2.5k

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deseq2 time series time course

updated 4.4 years ago by Michael Love 43k • written 4.4 years ago by bsierieb ▴ 10

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864

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scRNA-seq time series

4.6 years ago Bogdan ▴ 670

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1.1k

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deseq2 rnaseq repeated measures time series design formula

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by Dorien ▴ 10

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1.1k

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transcriptomics gene expression time series plant biology circadian Job

5.3 years ago dezer ▴ 10

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2.0k

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limma microarray time series DEG paired

updated 5.3 years ago by Gordon Smyth 52k • written 5.3 years ago by kawess • 0

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2.3k

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deseq2 Time Series Gene Clustering LRT ATACseq

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by kaiser.karim • 0

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1.5k

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deseq2 time series remove batch effect

5.9 years ago Nicola • 0

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3.8k

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limma design model.matrix time series splines

updated 6.0 years ago by Aaron Lun ★ 28k • written 6.0 years ago by tleona3 • 0

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1.3k

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limma time series help

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by rm1238 • 0

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1.5k

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deseq2 time series multiple factor design

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by Jane • 0

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2.2k

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rna-seq time series patient limma-voom

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by aec ▴ 90

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3.7k

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deseq2 ruvseq spike-in time course time series

updated 7.1 years ago by davide risso ▴ 980 • written 7.1 years ago by staceyborrego ▴ 20

12 results • Page 1 of 1

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

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A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

Bioconductor Course, Kenya 2025: Applications Open!

Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

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