Biostar Time Series

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1.6k

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deseq2 time series time course

updated 2.6 years ago by Michael Love 39k • written 2.6 years ago by bsierieb ▴ 10

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372

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scRNA-seq time series

2.7 years ago Bogdan ▴ 660

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442

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deseq2 rnaseq repeated measures time series design formula

updated 3.2 years ago by Michael Love 39k • written 3.2 years ago by Dorien • 0

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531

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transcriptomics gene expression time series plant biology circadian Job

3.5 years ago dezer ▴ 10

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905

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limma microarray time series DEG paired

updated 3.5 years ago by Gordon Smyth 47k • written 3.5 years ago by kawess • 0

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1.5k

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deseq2 Time Series Gene Clustering LRT ATACseq

updated 4.1 years ago by Michael Love 39k • written 4.1 years ago by kaiser.karim • 0

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876

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deseq2 time series remove batch effect

4.1 years ago Nicola • 0

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2.0k

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limma design model.matrix time series splines

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by tleona3 • 0

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712

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limma time series help

updated 4.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by rm1238 • 0

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833

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deseq2 time series multiple factor design

updated 4.3 years ago by Michael Love 39k • written 4.4 years ago by Jane • 0

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1.2k

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rna-seq time series patient limma-voom

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by aec ▴ 90

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2.3k

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deseq2 ruvseq spike-in time course time series

updated 5.3 years ago by davide risso ▴ 920 • written 5.3 years ago by staceyborrego ▴ 20

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Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k

Apologies. The first line should be result <- dba(sampleSheet=samples) I've gone back and edited previous replies to reflect this.

Answer: *** caught segfault *** , cause 'memory not mapped' by James W. MacDonald 62k

You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…

Comment: Help with Error in DiffBind by Chris • 0

Thanks Rory! result <- dba(samples) Error in if ((length(callers) == 1) & (callers[1] == "counts")) { : argument is of len…

Answer: Help with Error in DiffBind by Rory Stark ★ 4.7k

In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…

Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k

Looks like you should either delete the file > /labs/PI/atacseq_output_03172023/bwa/merged_library/DISEASED_REP2.mLb.clN.sorted.bam.bai …

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WGCNA: Module preservation vs consensus analysis

Answer: Help with Error in DiffBind

Comment: Help with Error in DiffBind

Comment: how can I do gene differential analysis on data after vst

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Supporter to linouhao ▴ 20