Bioconductor Txdb.hsapiens.ucsc.hg38.knowngene

Showing : txdb.hsapiens.ucsc.hg38.knowngene • reset

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

13 months ago davidhillis • 0

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673

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microRNA TxDb.Hsapiens.UCSC.hg38.knownGene

16 months ago • updated 15 months ago Lluís Revilla Sancho ▴ 730

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3.8k

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install TxDb.Hsapiens.UCSC.hg38.knownGene

2.1 years ago Theresa ▴ 20

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1.3k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 2.4 years ago by Hervé Pagès 16k • written 2.4 years ago by BioEpi • 0

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1.7k

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TxDb.Hsapiens.UCSC.hg38.knownGene

updated 3.2 years ago by James W. MacDonald 65k • written 3.2 years ago by lukijanczukpawel • 0

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996

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.2 years ago by kayla.interdonato ▴ 160 • written 4.2 years ago by jam526 • 0

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1.0k

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TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.3 years ago by shepherl 3.9k • written 4.3 years ago by bernatgel ▴ 150

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820

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HLA TxDb.Hsapiens.UCSC.hg38.knownGene

updated 4.3 years ago by kayla.interdonato ▴ 160 • written 4.3 years ago by Kamil Slowikowski ▴ 30

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2.7k

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TxDb.Hsapiens.UCSC.hg38.knownGene TxDb.Mmusculus.UCSC.mm10.ensGene

updated 4.6 years ago by James W. MacDonald 65k • written 4.6 years ago by Aditya ▴ 160

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2.0k

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TxDb.Hsapiens.UCSC.hg38.knownGene subset TxDb object

5.0 years ago Ruichao.Zeng ▴ 20

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2.8k

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txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db

updated 6.4 years ago by Simon Anders ★ 3.7k • written 6.4 years ago by Mark Dunning ★ 1.1k

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1.3k

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s4vectors bumphunter txdb.hsapiens.ucsc.hg38.knowngene

6.6 years ago Leonardo Collado Torres ★ 1.0k

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2.6k

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annotation txdb.hsapiens.ucsc.hg38.knowngene bug

7.6 years ago • updated 7.5 years ago shilin.zhao ▴ 40

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3.5k

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txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation

8.0 years ago enricoferrero ▴ 660

14 results • Page 1 of 1

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Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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