Showing : tximportData • reset
1
vote
2
replies
308
views
The default value of 'abundanceCol'
tximportData
5 months ago Jinghua • 0
0
votes
1
reply
495
views
Error: lexical error: invalid char in json text (alevin-seurat)
tximpo tximportData alevinQC
updated 11 months ago by ★ 5.0k • written 12 months ago by • 0
0
votes
2
replies
935
views
Need new version : tx2gene.gencode.v47.csv
tximportData
13 months ago • updated 8 months ago Gaurav • 0
4
votes
5
replies
1.6k
views
DESeq Input from Salmon + tximport/tximeta
tximportData summarizeToGene tximport DESeq2 salmon
15 months ago LuciaNhu • 0
0
votes
4
replies
1.1k
views
Create count matrix from multible quant sf files from different directories
tximportData tximport salmon
20 months ago JG13 • 0
2
votes
9
replies
2.6k
views
Importing RSEM processed data already formatted as a summarized experiment into DESeq2
tximport tximportData DESeq2
2.6 years ago Ndimensional ▴ 20
0
votes
2
replies
1.3k
views
tximport error in reading salmon output files?
tximport tximportData
updated 2.0 years ago by • 0 • written 2.6 years ago by • 0
2
votes
3
replies
2.3k
views
Error while reading rsem files in tximport
DESeq2 tximport rsem RNASeq tximportData
3.2 years ago mohammedtoufiq91 ▴ 10
3
votes
3
replies
1.9k
views
What is the correct way to import transcript abundances from 3' Quantseq results that calculated by kallisto?
tximport tximportData Quantseq kallisto
3.3 years ago duhwa.lee • 0
0
votes
4
replies
2.1k
views
Alternative for wininet method in tximeta
DESeq2 tximport tximportData tximeta
3.6 years ago uhlkatie • 0
2
votes
3
replies
1.6k
views
Import RSEM output without sample data
DESeq2 tximportData tximport
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
0
votes
3
replies
1.5k
views
tximport fails when RSEM output options produce files with additional columns?
DESeq2 tximportData tximpor
updated 4.6 years ago by 43k • written 4.6 years ago by • 0
0
votes
1
reply
1.3k
views
Multi-factor Analysis in DeSEQ2
tximport R tximportData RNASeq DESeq2
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
0
votes
7
replies
2.6k
views
Problem with Tximport
tximportData tximport
5.0 years ago agoesmartini • 0
0
votes
1
reply
1.4k
views
How to use tx import on output of abundance file
tximportData tximport
updated 5.2 years ago by ★ 4.0k • written 5.2 years ago by • 0
0
votes
4
replies
2.0k
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon tximport tximportdata ensembl
updated 5.8 years ago by 43k • written 5.8 years ago by • 0
1
vote
2
replies
1.5k
views
What is the expected location of bootstrap samples relative to quant.sf file ?
tximport tximportdata salmon
7.3 years ago fcuy047 • 0
1
vote
2
replies
1.6k
views
trouble importing data for DEseq2 workflow
deseq2 tximport tximportdata pasilla Tutorial
updated 7.3 years ago by 43k • written 7.3 years ago by • 0
1
vote
8
replies
38k
views
How to create tx2gene.gencode.v27.csv
tximportdata
updated 7.6 years ago by 43k • written 7.6 years ago by • 0
2
votes
6
replies
2.3k
views
[DESeq2] Different results from tutorial
deseq2 tximportdata tximport
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
0
votes
1
reply
3.1k
views
could not find function "tximport"
tximportdata
updated 7.9 years ago by 53k • written 7.9 years ago by ▴ 30
0
votes
9
replies
4.4k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte tximportData
updated 8.0 years ago by ▴ 80 • written 9.6 years ago by ▴ 40
0
votes
3
replies
16k
views
Problem installing tximportData
tximportdata
8.9 years ago elg • 0
3
votes
5
replies
3.3k
views
txImport: a gene seems missing from the sample data
txImportData txImport
updated 5.0 years ago by 68k • written 8.9 years ago by • 0
1
vote
1
reply
2.2k
views
How to remove genes with 0 counts in tximport?
tximport deseq tximportdata deseq2
updated 9.0 years ago by 43k • written 9.0 years ago by ▴ 20
0
votes
7
replies
2.3k
views
PCA results different from th same sample but different counting method
deseq2 pca tximportdata htseqcounts
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 40
26 results • Page 1 of 1
Recent ...
Replies
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Awards • All
Teacher to Michael Love 43k
Supporter to fl ▴ 20
Popular Question to James W. MacDonald 68k
Popular Question to rcavalca ▴ 140
Popular Question to James Aiden • 0
Locations • All
Pakistan, 1 minute ago
United States, 1 minute ago
Czechia, 42 minutes ago
Germany, 46 minutes ago
Germany, 1 hour ago
Traffic: 1498 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6