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2
votes
10
replies
2.8k
views
Time-series analysis with DESeq2
deseq2 time-series design matrix edger
updated 5.2 years ago by 42k • written 5.2 years ago by ★ 1.5k
0
votes
1
reply
741
views
differentail expression analysis with interaction terms
edger deseq2 interaction design matrix
updated 5.3 years ago by 65k • written 5.3 years ago by ★ 1.5k
0
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1
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1.5k
views
Comment: C: shRNA-Seq analysis using edgeR
5.5 years ago Assa Yeroslaviz ★ 1.5k
0
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1
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1.5k
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Comment: C: shRNA-Seq analysis using edgeR
5.5 years ago Assa Yeroslaviz ★ 1.5k
0
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1
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1.5k
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Comment: C: shRNA-Seq analysis using edgeR
5.5 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
1.5k
views
Comment: C: shRNA-Seq analysis using edgeR
5.5 years ago Assa Yeroslaviz ★ 1.5k
1
vote
9
replies
1.5k
views
shRNA-Seq analysis using edgeR
shrnaseq edger experimental design model.matrix
updated 5.5 years ago by ★ 28k • written 5.5 years ago by ★ 1.5k
7
votes
5
replies
3.9k
views
summarize scores of GRanges into bins
genomicranges grangeslist bin findoverlaps
updated 5.6 years ago by • 0 • written 6.7 years ago by ★ 1.5k
0
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1
reply
1.1k
views
Comment: C: differential expression analysis of cell subtypes mixture
6.2 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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1.1k
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Comment: C: differential expression analysis of cell subtypes mixture
6.2 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
1.2k
views
Comment: C: Unmix() function in DeSeq capabilities
6.2 years ago Assa Yeroslaviz ★ 1.5k
0
votes
5
replies
1.1k
views
differential expression analysis of cell subtypes mixture
deseq2 edgeR design matrix multifactorial design
updated 6.2 years ago by ★ 28k • written 6.2 years ago by ★ 1.5k
0
votes
0
replies
796
views
using the edgeR for sgRNA workflow with my own data
edger sgrna processamplicons
6.2 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
3.0k
views
Comment: C: duplicated row names when creating DESeqDataSetFromMatrix
6.2 years ago Assa Yeroslaviz ★ 1.5k
1
vote
3
replies
3.0k
views
duplicated row names when creating DESeqDataSetFromMatrix
deseq2 DESeqDataSetFromMatrix duplicate
updated 6.2 years ago by 65k • written 6.2 years ago by ★ 1.5k
0
votes
0
replies
5.2k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
6.3 years ago Assa Yeroslaviz ★ 1.5k
2
votes
11
replies
5.2k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint() msa multiplealignment export
updated 6.3 years ago by ▴ 290 • written 6.3 years ago by ★ 1.5k
0
votes
0
replies
5.2k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
6.3 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
5.2k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
6.3 years ago Assa Yeroslaviz ★ 1.5k
0
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0
replies
5.2k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
6.3 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
5.2k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
6.3 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
5.2k
views
Comment: C: How do I extract the complete MsaAAMultipleAlignment object to a file
6.3 years ago Assa Yeroslaviz ★ 1.5k
0
votes
2
replies
1.5k
views
stimulation effects between wild-type and knockout cells using deseq
multiple factor design interactions design matrix deseq2
updated 6.5 years ago by 42k • written 8.5 years ago by ★ 1.5k
0
votes
2
replies
2.0k
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Comment: C: complex design for chip-seq analysis
6.6 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
2.0k
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Comment: C: complex design for chip-seq analysis
6.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
905
views
resize functions causes an error - "could not find function "unsafe.update"
genomicranges iranges resize
6.6 years ago Assa Yeroslaviz ★ 1.5k
3
votes
7
replies
2.0k
views
complex design for chip-seq analysis
chipseq csaw limma design matrix multiple factor design
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ★ 1.5k
0
votes
0
replies
2.7k
views
pheatmap - Error in do_one(nmeth) : NA/NaN/Inf in foreign function call (arg 1)
pheatmap kmeans
6.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
7.0k
views
Comment: C: deseq2 correcting for batch effects
updated 6.6 years ago by 42k • written 6.6 years ago by ★ 1.5k
6
votes
3
replies
7.0k
views
deseq2 correcting for batch effects
deseq2 batch effect removebatcheffect() design matrix
updated 6.6 years ago by 42k • written 6.6 years ago by ★ 1.5k
0
votes
1
reply
758
views
DESeq2 for ChIP on chip microarrays
deseq2 microarray nimblegene ratio limma
updated 6.6 years ago by 42k • written 6.6 years ago by ★ 1.5k
0
votes
1
reply
1.2k
views
Comment: C: read.maimages
6.6 years ago Assa Yeroslaviz ★ 1.5k
2
votes
3
replies
1.2k
views
read.maimages
Annotation CGH limma Annotation CGH limma
updated 6.6 years ago by 50k • written 11.8 years ago by ★ 1.5k
1
vote
1
reply
3.5k
views
Comment: C: saving a plot as png and also showing inside Rstudio
6.6 years ago Assa Yeroslaviz ★ 1.5k
1
vote
0
replies
1.3k
views
Comment: C: Error in tximport, unused argument (reader = read_tsv)
6.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
2.4k
views
Answer: A: RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
6.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
2.4k
views
Comment: C: RangedSummarizedExperiment in Deseq2 and DESeqDataSetFromMatrix
6.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
6.0k
views
Comment: C: converting a GRangesList object with different lengths into a data frame
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
6.0k
views
Comment: C: converting a GRangesList object with different lengths into a data frame
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
6.0k
views
Comment: C: converting a GRangesList object with different lengths into a data frame
6.7 years ago Assa Yeroslaviz ★ 1.5k
6
votes
6
replies
6.0k
views
converting a GRangesList object with different lengths into a data frame
genomicranges grangeslist dataframe irangeslist lists
updated 6.7 years ago by ★ 11k • written 6.7 years ago by ★ 1.5k
0
votes
0
replies
3.9k
views
Comment: C: summarize scores of GRanges into bins
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
2.0k
views
Comment: C: subsetByOverlaps with Multimapping
6.7 years ago Assa Yeroslaviz ★ 1.5k
2
votes
3
replies
2.0k
views
subsetByOverlaps with Multimapping
genomicranges subsetbyoverlaps granges findoverlaps
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
2.0k
views
Comment: C: subsetByOverlaps with Multimapping
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
3.9k
views
Comment: C: subsetting GRanges object based on gene IDs
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
votes
0
replies
3.0k
views
Comment: C: (Big)wig file of complete chromosome
6.7 years ago Assa Yeroslaviz ★ 1.5k
4
votes
3
replies
3.9k
views
subsetting GRanges object based on gene IDs
genomicranges genomicfeatures granges subsetting
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
3.0k
views
Comment: C: (Big)wig file of complete chromosome
6.7 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
3.0k
views
Comment: C: (Big)wig file of complete chromosome
6.7 years ago Assa Yeroslaviz ★ 1.5k
327 results • Page 2 of 7
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