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0
votes
1
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547
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Bioconductor tool for curating annotations?
Annotation
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 180
2
votes
2
replies
2.4k
views
Feature request: syntax for dropping unused seqlevels in GRanges objects
granges seqlevels feature request
updated 24 months ago by ▴ 20 • written 7.0 years ago by ▴ 180
1
vote
0
replies
789
views
How about a getSeq() method for GRanges ?
GenomicRanges BSGenome
2.1 years ago Charles Plessy ▴ 180
0
votes
0
replies
478
views
Text display of entire `DNAMultipleAlignment` objects
Biostrings
2.2 years ago Charles Plessy ▴ 180
0
votes
0
replies
662
views
Pairwise alignment results with the original coordinates.
Biostrings Alignment
2.3 years ago Charles Plessy ▴ 180
2
votes
1
reply
836
views
How to find the BSgenome object that provided the seqinfo of a GRanges object ?
BSgenome
updated 2.3 years ago by 16k • written 2.3 years ago by ▴ 180
4
votes
1
reply
1.0k
views
Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 2.4 years ago by 16k • written 2.4 years ago by ▴ 180
3
votes
2
replies
1.1k
views
Please allow integers in `numeric` format in `seqlengths`
GenomeInfoDb
updated 2.5 years ago by 16k • written 2.5 years ago by ▴ 180
4
votes
1
reply
763
views
`promoters()` fails on `GPos` objects
GenomicRanges
updated 2.5 years ago by 16k • written 2.5 years ago by ▴ 180
0
votes
2
replies
1.1k
views
Handling missing seqlenghts
GenomicRanges
2.6 years ago • updated 2.5 years ago Charles Plessy ▴ 180
0
votes
2
replies
1.0k
views
BLAST-like alignment of a DNAString to a BSgenome?
Alignment Genome
2.6 years ago Charles Plessy ▴ 180
3
votes
6
replies
1.2k
views
Better way to find head to head GRanges?
promoter
updated 4.0 years ago by 16k • written 4.0 years ago by ▴ 180
0
votes
1
reply
713
views
Is there an easy way to do pos(x) <- pos(x) + 1 for a GPos object ?
GenomicRanges GPos
4.0 years ago Charles Plessy ▴ 180
2
votes
1
reply
621
views
How to make a GPos subclass that accept both UnstitchedGPos and StitchedGPos inputs?
GenomicRanges
updated 4.8 years ago by 16k • written 4.8 years ago by ▴ 180
2
votes
1
reply
1.3k
views
Build error: could not find function "bplapply"
biocparallel build report
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 180
0
votes
0
replies
785
views
Circular plot of transcript models with ggbio.
ggbio
6.6 years ago Charles Plessy ▴ 180
2
votes
2
replies
1.2k
views
bplapply slow to decide number of cores
biocparallel
updated 6.6 years ago by 25k • written 6.6 years ago by ▴ 180
2
votes
4
replies
1.4k
views
Generic functions for DataFrames of Rle objects ?
DataFrame Rle generic expression table
updated 10 months ago by 16k • written 7.0 years ago by ▴ 180
4
votes
5
replies
1.5k
views
Can not install Bioconductor 3.5's GenomicRanges package via biocLite.
package installation
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 180
2
votes
4
replies
1.4k
views
rtracklayer::import.bed does not close connections.
rtracklayer
updated 7.0 years ago by ★ 11k • written 7.0 years ago by ▴ 180
0
votes
0
replies
857
views
Suggestion for a regression test in XVector
xvector
7.1 years ago Charles Plessy ▴ 180
2
votes
1
reply
953
views
Function to convert genomic ranges to browser-friendly coordinates ?
granges coordinate genome browser
updated 7.7 years ago by ★ 11k • written 7.7 years ago by ▴ 180
2
votes
3
replies
1.8k
views
How to add chromosomes to a BSgenome ?
bsgenome virus
updated 7.7 years ago by 16k • written 7.7 years ago by ▴ 180
2
votes
1
reply
1.1k
views
Obsolete use of AC_INIT macro
rtracklayer
updated 8.0 years ago by ★ 11k • written 8.0 years ago by ▴ 180
24 results • Page 1 of 1
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