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32
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recount3 problem downloading data from source sra
recount3
updated 2 hours ago by ★ 1.0k • written 5 hours ago by • 0
0
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1
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39
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Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix Bioconductor
3 hours ago minardsmitha ▴ 10
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FindOverlaps, makeVennDiagram and "others"
ATACSeq peaks ATAC ChIPpeakAnno
7 hours ago • updated 4 hours ago Raghad • 0
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725
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How to arrange multiple plots into one page in NOISeq?
noiseq RNA-seq quality control
updated 5 hours ago by • 0 • written 4.7 years ago by ▴ 80
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1
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44
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Documenting resources in an `ExperimentHub` package?
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updated 5 hours ago by 66k • written 21 hours ago by • 0
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258
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ChAMP installation issue
Cha ChAMP
updated 5 hours ago by 3.9k • written 8 days ago by • 0
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Conditional analysis
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6 hours ago SuperDad • 0
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39
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Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
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updated 7 hours ago by 66k • written 8 hours ago by ▴ 10
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BayesSpace parameters for DLPFC Visium data
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40
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Ensembl plants at annotationHub?
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updated 11 hours ago by ★ 2.0k • written 5.5 years ago by ★ 4.0k
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2
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67
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Errors in chromosome annotation-biomaRt
org.Rn.eg.db biomaRt
written 1 day ago by ▴ 40
12 results • Page 1 of 1
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Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
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how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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