0
votes
2
replies
3.1k
views
org.Sc.sgd.db: Yeast ensembl ID to entrez ID conversion problem
GO Yeast GO Yeast
15.8 years ago Julie Zhu ★ 4.3k
0
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1
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1.1k
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BiomaRt query
biomaRt biomaRt
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 60
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1
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help on reading Agilent 44k 2 colour
Genetics limma Genetics limma
updated 15.8 years ago by ▴ 190 • written 15.8 years ago by ▴ 60
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5
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R/Maanova Tutorial
updated 15.8 years ago by ▴ 240 • written 15.8 years ago by ▴ 20
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3
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Agilent one colour
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 320
0
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8
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arrayQualityMetrics: Binning grid too coarse for current (small) bandwidth
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updated 15.8 years ago by ▴ 110 • written 15.8 years ago by ▴ 50
0
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1
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1.2k
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reverse engineering package
minet qpgraph minet qpgraph
updated 15.8 years ago by ★ 3.4k • written 15.9 years ago by ★ 1.2k
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6
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Ecoli antisense library
Microarray Microarray
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 140
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2
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1.4k
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what is the website to get gene name from Affy probe set ID?
probe affy probe affy
updated 15.8 years ago by ▴ 220 • written 15.9 years ago by ▴ 820
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7
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1.7k
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64-bit R
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 890
0
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2
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1.4k
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Question about iFlow
iFlow iFlow
updated 15.8 years ago by ▴ 580 • written 15.8 years ago by ▴ 70
0
votes
6
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1.2k
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Version package in release
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 120
0
votes
1
reply
1.1k
views
questions regarding simpleaffy and justMAS
Normalization affy Normalization affy
updated 15.8 years ago by 68k • written 15.8 years ago by ▴ 820
0
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0
replies
1.3k
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Calculation of $stdev.unscaled and $sigma values by lmfit() in Limma package
15.8 years ago Gordon Smyth 53k
3
votes
1
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8.9k
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Annotation for a GEO data set
Annotation annotate GEOquery Annotation annotate GEOquery
updated 15.8 years ago by 21k • written 15.9 years ago by ▴ 20
0
votes
0
replies
980
views
function similar to phyper function that can handle 3 or more gene lists
15.8 years ago k. brand ▴ 420
0
votes
1
reply
877
views
xps: convert a data frame to ExprTreeSet
convert convert
updated 15.8 years ago by ★ 3.9k • written 15.8 years ago by ▴ 330
0
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1
reply
1.8k
views
Calculation of $stdev.unscaled and $sigma values by lmfit() in Limma package
updated 15.8 years ago by ★ 7.4k • written 15.8 years ago by ▴ 10
1
vote
3
replies
1.3k
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Get gene structure information: use biomaRt or other annotation packages?
Annotation biomaRt Annotation biomaRt
updated 15.8 years ago by ★ 3.4k • written 15.8 years ago by ★ 4.3k
0
votes
0
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1.1k
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MArray into data.frame for SPIA package
limma marray SPIA limma marray SPIA
15.8 years ago Gordon Smyth 53k
0
votes
2
replies
930
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GO.db and org.XX.eg.db: update frequency?
Annotation GO Annotation GO
updated 15.8 years ago by 25k • written 15.8 years ago by ★ 4.3k
0
votes
2
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1.2k
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xps: returns only 21 records
Preprocessing Preprocessing
updated 15.8 years ago by ★ 3.9k • written 15.8 years ago by ▴ 330
0
votes
1
reply
1.6k
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GEOquery problem
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 50
0
votes
0
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1.2k
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request: calculate coverage with weight on RangedData object
Coverage Cancer IRanges Coverage Cancer IRanges
15.8 years ago Janet Young ▴ 740
0
votes
1
reply
1.5k
views
SPIA package
graph SPIA graph SPIA
updated 15.8 years ago by ★ 7.4k • written 15.8 years ago by ▴ 200
0
votes
1
reply
1.0k
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MArray into data.frame for SPIA package
limma limma
updated 15.8 years ago by ★ 7.4k • written 15.8 years ago by ▴ 200
0
votes
0
replies
2.1k
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Job: Bioinformatics Data Analyst in Vienna, Austria
15.8 years ago Ido M. Tamir ▴ 320
0
votes
2
replies
915
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Tools for comparing microarray data on a snp level
SNP cdf SNP cdf
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 40
0
votes
0
replies
1.0k
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A statistical analyst or a post-doctoral position available immediately at Northwestern University
15.8 years ago Pan Du ★ 1.2k
0
votes
10
replies
2.8k
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microRNA: which genes code for a specific mirna?
miRNA GO microRNA miRNA GO microRNA
updated 15.8 years ago by ▴ 830 • written 15.8 years ago by ★ 1.1k
0
votes
8
replies
2.1k
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IRanges: cbind not well defined for RangedData?
updated 15.8 years ago by ★ 11k • written 15.8 years ago by ▴ 550
0
votes
2
replies
1.2k
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IRanges: setting score() on RangedData drops rownames
updated 15.8 years ago by ★ 1.6k • written 15.8 years ago by ▴ 550
0
votes
0
replies
897
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Favor: ChIPpeakAnno
PROcess PROcess
15.8 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
879
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CN analysis on a small Affymetrix GWS6 data set (Was: Re: QC Affy 6.0 SNP arrays with crlmm or Oligo?)
Preprocessing Preprocessing
15.8 years ago Henrik Bengtsson ★ 2.4k
0
votes
1
reply
1.1k
views
limma lmFit error: Coefficients not estimable
limma limma
15.8 years ago Freydin, Maxim ▴ 30
0
votes
6
replies
2.0k
views
QC Affy 6.0 SNP arrays with crlmm or Oligo?
Normalization oligo crlmm Normalization oligo crlmm
updated 15.8 years ago by ★ 4.3k • written 15.8 years ago by ▴ 150
0
votes
8
replies
2.7k
views
hclust for 13000 genes
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 240
0
votes
12
replies
4.3k
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problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
updated 15.8 years ago by ★ 2.0k • written 15.8 years ago by ▴ 50
0
votes
5
replies
1.5k
views
package or code to quantify the significance of the venn overlap between 2 or 3 lists of genes
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 420
0
votes
1
reply
746
views
Package for Agilent microdata
updated 15.8 years ago by ★ 13k • written 15.8 years ago by ▴ 10
0
votes
3
replies
2.6k
views
getGEO - getting the .CEL files from GEO
Microarray Microarray
updated 15.8 years ago by 6.7k • written 15.8 years ago by ▴ 10
0
votes
2
replies
1.7k
views
AgiMicroRna package is not available at bioconductor or not in active form???
Microarray Network microRNA AgiMicroRna Microarray Network microRNA AgiMicroRna
updated 15.8 years ago by ▴ 60 • written 15.8 years ago by 21k
0
votes
0
replies
1.4k
views
SNP plotter package
SNP SNP
15.8 years ago Kay Jaja ▴ 90
0
votes
0
replies
925
views
FW: Bioconductor
affy oligo affy oligo
15.8 years ago Dana.Stanley@csiro.au ▴ 110
0
votes
1
reply
1.2k
views
AffyPLM's MAplot and cex
updated 15.8 years ago by ★ 1.2k • written 15.8 years ago by ▴ 120
0
votes
0
replies
941
views
Fwd: problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
15.8 years ago Sean Davis 21k
0
votes
1
reply
1.1k
views
multicore package and AnnotationDbi
GO rat2302 AnnotationDbi GO rat2302 AnnotationDbi
updated 15.8 years ago by 6.7k • written 15.8 years ago by ▴ 10
0
votes
1
reply
1.6k
views
log Fold Change
limma limma
updated 15.8 years ago by ★ 3.4k • written 15.8 years ago by ▴ 10
0
votes
4
replies
1.9k
views
Reg: T-statistic using limma
PROcess PROcess
15.8 years ago Rohit Farmer ▴ 170
0
votes
8
replies
2.4k
views
(no subject)
limma limma
updated 15.8 years ago by ▴ 240 • written 15.8 years ago by ▴ 40
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Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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