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deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
9 days ago • updated 6 days ago
sajadahmad41454
• 0
0
votes
3
replies
151
views
ChAMP installation issue
Cha
ChAMP
4 days ago • updated 3 days ago
e1271094
• 0
0
votes
3
replies
70
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STRINGdb : error with string_db$plot_network()
STRINGdb
updated 11 hours ago by
damian.szk
▴ 80 • written 14 hours ago by
ninidea
• 0
1
vote
2
replies
223
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
4 days ago • updated 1 day ago
BioinfGuru
▴ 30
0
votes
2
replies
84
views
Problem finding certain variables when importing a public database GSE73103
GSEABase
GenomicDistributionsData
4 days ago • updated 3 days ago
Yveto
• 0
0
votes
1
reply
68
views
Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
updated 4 hours ago by
swbarnes2
★ 1.4k • written 17 hours ago by
Ken C
• 0
0
votes
1
reply
59
views
Retrieving ceRNA data from the starBase or ENCORI Web API
microRNA
starBase
ceRNA
WebAPI
ENCORI
3 days ago • updated 2 days ago
Bhavya
• 0
0
votes
1
reply
39
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DESeq2- Mysterious interaction suppresses DEGs
DESeq2
PCAplot
RNA-Seq
DesignModel
10 hours ago • updated 9 hours ago
shaunpeterson
• 0
0
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0
replies
55
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ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
1 day ago
Anton01
• 0
0
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0
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13
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Spam:
Unveiling Unmatched Best Custom Patches
SIMAT
1 day ago
oliverelijhan
0
0
votes
0
replies
41
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ReactomeGSA for RNASeq
ReactomeGSA
BatchEffect
RNASeqData
1 day ago
Shaimaa Gamal
• 0
0
votes
0
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42
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determine k during RUVSeq
RUVSeq
RUVnormalize
1 day ago
Ειρήνη
• 0
0
votes
0
replies
32
views
query regarding how to apply WGCNA on replicates
replicatesRNAseq
WGCNA
2 days ago
k200987
• 0
0
votes
0
replies
27
views
Minor alleles giving NA from R biomart getBM?
biomaRt
minoralleledata
grch38
getBM
18 hours ago
Jeremy.Clark
• 0
0
votes
0
replies
29
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Difference in Contrast in DiffBind
DiffBind
2 days ago
zzrammal
• 0
0
votes
0
replies
46
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
3 days ago
Researcher
• 0
0
votes
0
replies
33
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO
KEGG
gage
pathview
2 days ago
danalvoronov
▴ 10
17 results • Page
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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