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BioConductor
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3
replies
171
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Integration: Paired-end vs healthy single-end from a different source
Bioconductor
written 3 days ago by
m.c.ruma
• 0
1
vote
3
replies
247
views
"Watched Tags" are being erased rather than updated
Bioconductor
updated 2 days ago by
shepherl
4.2k • written 7 days ago by
jessica.anderson
▴ 10
0
votes
1
reply
168
views
Question about collapsing ASVs by genus level during DESeq2 analysis
Bioconductor
updated 2 days ago by
Michael Love
43k • written 29 days ago by
acharyapratiksha24
• 0
0
votes
7
replies
2.0k
views
News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
written 2.7 years ago by
Maria Doyle
▴ 100
0
votes
0
replies
11
views
Spam:
The Neon Code PolyTrack
Bioconductor
6 days ago
residentialplayt
0
2
votes
1
reply
110
views
News:
Bioconductor 3.22 Released!
release
Release
Bioconductor
Software
written 7 days ago by
shepherl
4.2k
0
votes
0
replies
57
views
News:
Save the Date: BioC2026
Bioconductor
9 days ago
shepherl
4.2k
0
votes
3
replies
187
views
Using DESeq2 for age prediction
Bioconductor
updated 10 days ago by
ATpoint
★ 5.0k • written 12 days ago by
picasa1983
• 0
4
votes
3
replies
502
views
DESeq2 for candidate gene analysis
Bioconductor
written 6 weeks ago by
piffelpaff
▴ 20
2
votes
2
replies
241
views
DESeq2 design for haplotype MPRA
Bioconductor
23 days ago
Rita
• 0
0
votes
3
replies
231
views
"organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
Bioconductor
23 days ago
ubjw24
• 0
0
votes
3
replies
353
views
NA values for DESeq2 p-values and adjusted p-values using large sample sizes
Bioconductor
4 weeks ago • updated 22 days ago
Gabriel
• 0
0
votes
1
reply
113
views
Gatins Set error
flowCore
Bioconductor
updated 4 weeks ago by
James W. MacDonald
68k • written 4 weeks ago by
yoav.lubelsky
• 0
0
votes
1
reply
134
views
Job:
Senior Teaching Fellow (MSc Computational Biomedicine)
Bioconductor
written 4 weeks ago by
s.samarajiwa
• 0
0
votes
1
reply
197
views
What R/Bioconductor tools would you recommend for the analysis of sncRNA, specifically piRNA?
Bioconductor
written 4 weeks ago by
Matthew Thornton
▴ 380
0
votes
0
replies
210
views
News:
Bioconductor 3.22 Release Schedule
Devel
Release
Bioconductor
7 weeks ago • updated 5 weeks ago
shepherl
4.2k
1
vote
1
reply
249
views
incomplete imputation of missing values with LEA impute() function
Bioconductor
LEA
5 weeks ago
nadia
• 0
1
vote
1
reply
303
views
Streamlining the computing time for MiloDE p-value correction in large dataset?
SingleCellExperiment
edgeR
miloR
Bioconductor
updated 4 weeks ago by
ATpoint
★ 5.0k • written 5 weeks ago by
Joseph
• 0
0
votes
0
replies
111
views
featureCounts -L: high unassigned:mapq fraction
Bioconductor
updated 5 weeks ago by
James W. MacDonald
68k • written 5 weeks ago by
sikora
• 0
1
vote
2
replies
291
views
Error Loading Experiment from SimBenchData Package
Bioconductor
5 weeks ago • updated 4 weeks ago
ksankaran
• 0
0
votes
3
replies
290
views
Sharing a collection of datasets in ExperimentHub
Bioconductor
updated 5 weeks ago by
Aaron Lun
★ 29k • written 6 weeks ago by
Stephen Piccolo
▴ 600
0
votes
1
reply
166
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor
SpliceWiz
6 weeks ago
jalte.jelsing
• 0
0
votes
1
reply
118
views
Problem with the TMB plot
Bioconductor
written 6 weeks ago by
nayanajose
• 0
0
votes
1
reply
177
views
After running samtools, the featureCounts command crashed.
RNASeqData
Bioconductor
RNASeq
written 7 weeks ago by
Rui
• 0
0
votes
6
replies
410
views
GO.db and others package Download failure
GO.db
Bioconductor
updated 7 weeks ago by
James W. MacDonald
68k • written 7 weeks ago by
Skyler
• 0
0
votes
0
replies
111
views
Job:
Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
7 weeks ago
Wolfgang Huber
★ 13k
0
votes
1
reply
348
views
News:
Bioconductor Board Nominations Open
TAB
Bioconductor
CAB
written 3 months ago by
shepherl
4.2k
0
votes
0
replies
216
views
Guidance Requested on GCN Network Analysis and Module Enrichment in R
BioNERO
Bioconductor
Arabidopsis_thaliana_Data
updated 12 weeks ago by
Michael Love
43k • written 3 months ago by
Sabina
• 0
0
votes
0
replies
198
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
4 months ago
Wei Shi
★ 3.6k
0
votes
3
replies
2.3k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma
Bioconductor
Metabolomics
updated 4 months ago by
Gordon Smyth
53k • written 4 months ago by
anni
• 0
0
votes
2
replies
1.0k
views
Starting with a clean bioconductor rstudio container
Bioconductor
updated 4 months ago by
ATpoint
★ 5.0k • written 4 months ago by
Ramiro
• 0
0
votes
9
replies
13k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 5 months ago by
Hadi
• 0 • written 4.3 years ago by
charlotte
▴ 10
0
votes
0
replies
318
views
Job:
Lab Head positions at the WEHI, Melbourne, Australia
JobPosting
Bioconductor
5 months ago
Gordon Smyth
53k
0
votes
4
replies
8.7k
views
Bioconductor version cannot be validated
Bioconductor
Annotation
Ann
written 2.1 years ago by
Aytaç
• 0
0
votes
2
replies
522
views
GBCC2025: New Scholarship Opportunities Available!
Community
Conference
GBCC2025
Bioconductor
updated 11 weeks ago by
Liona
• 0 • written 5 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
446
views
Best tximport quant.genes.sf
tximport
tximeta
Bioconductor
updated 5 months ago by
ATpoint
★ 5.0k • written 5 months ago by
yob4003
• 0
0
votes
2
replies
812
views
Version conflict when pushing to scQTLtools devel branch
Bioconductor
written 6 months ago by
XFWu
• 0
1
vote
5
replies
1.7k
views
Package developing and interoperation with Bioconductor
Package
Bioconductor
written 7 months ago by
slizchap
• 0
0
votes
5
replies
2.6k
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
written 21 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
768
views
News:
List of Deprecated Packages for Bioc3.20
Release
Devel
Bioconductor
12 months ago • updated 7 months ago
shepherl
4.2k
0
votes
0
replies
511
views
News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
Community
Conference
Bioconductor
8 months ago
Maria Doyle
▴ 100
0
votes
3
replies
644
views
batch effect removal for agilent microarray data
"
"Bioconductor"
Bioconductor
8 months ago
gaye.yilmaz
• 0
0
votes
0
replies
535
views
Job:
Research Software Engineer - Bioconductor tools for biological data science and AI
Bioconductor
8 months ago
Wolfgang Huber
★ 13k
0
votes
5
replies
1.8k
views
For some reason I can't update BiocManager to 3.20
Bioconductor
updated 8 months ago by
shepherl
4.2k • written 8 months ago by
azm.ana2
• 0
0
votes
0
replies
434
views
News:
GBCC2025 Abstract Submissions & Registration Now Open!
Community
Conference
GBCC2025
Bioconductor
8 months ago
Maria Doyle
▴ 100
0
votes
0
replies
264
views
News:
Announcing the GBCC2025 Logo Design Winner!
Community
Conference
GBCC2025
Bioconductor
9 months ago
Maria Doyle
▴ 100
1
vote
0
replies
571
views
News:
Bioconductor Course, Kenya 2025: Applications Open!
Events
Community
Training
Africa
Bioconductor
9 months ago
Maria Doyle
▴ 100
0
votes
4
replies
2.2k
views
News:
EuroBioC2023 abstract submission closing soon!
presentation
EuroBioc2023
Conference
community
Bioconductor
written 2.6 years ago by
Maria Doyle
▴ 100
0
votes
2
replies
596
views
Build error on kunpeng2 Linux aarch64
Bioconductor
updated 10 months ago by
wise
• 0 • written 10 months ago by
Hongxiang
• 0
2
votes
1
reply
787
views
bioconductor packages on bioconda
Bioconductor
updated 11 months ago by
James W. MacDonald
68k • written 11 months ago by
risch.vinzent
• 0
906 results • Page
1 of 19
Recent ...
Replies
Comment: Failure to download resources (MeSHDb) from AnnotationHub
by
Steve Lianoglou
★ 13k
That fixed it, thanks Lori!
Comment: Suppress warning in RHDF5 write
by
nicolas.lhuillier
• 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Answer: Suppress warning in RHDF5 write
by
James W. MacDonald
68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub
by
shepherl
4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Answer: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
This should now be resolved
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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68k
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