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3
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1.2k
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News: EuroBioC2023 abstract submission closing soon!
presentation EuroBioc2023 Conference community Bioconductor
written 21 months ago by ▴ 90
0
votes
5
replies
1.1k
views
News: EuroBioC2024 abstract submission is open!
Conference Bioconductor EuroBioC2024
updated 12 days ago by • 0 • written 11 months ago by ▴ 90
0
votes
2
replies
246
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Build error on kunpeng2 Linux aarch64
Bioconductor
updated 7 days ago by • 0 • written 23 days ago by • 0
2
votes
1
reply
269
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bioconductor packages on bioconda
Bioconductor
updated 6 weeks ago by 67k • written 6 weeks ago by • 0
1
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3
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435
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Allele frequencies for ALL alleles of one SNP ?
Bioconductor
8 weeks ago • updated 7 weeks ago Abiologist • 0
10
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7
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1.8k
views
Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 8 weeks ago by 4.1k • written 23 months ago by ▴ 50
1
vote
0
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463
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News: Bioconductor 3.20 is Released!
Bioconductor Release Software
10 weeks ago shepherl 4.1k
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0
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181
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News: Announcing the GBCC2025 Logo Design Contest!
Conference Community Galaxy GBCC2025 Bioconductor
10 weeks ago Maria Doyle ▴ 90
1
vote
3
replies
633
views
Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 11 weeks ago by 67k • written 11 weeks ago by • 0
0
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0
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165
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News: List of Deprecated Packages for Bioc3.20
Devel Bioconductor Release
11 weeks ago • updated 10 weeks ago shepherl 4.1k
1
vote
2
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561
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DESeq2 design and contrasts with 2 drug-treated and one control group
DESeq2 Bioconductor
updated 3 months ago by 43k • written 3 months ago by ▴ 10
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0
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212
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News: Opportunity for Carpentries Instructors to Teach Bioconductor in Africa
Carpentries Community Teaching Bioconductor
3 months ago Maria Doyle ▴ 90
1
vote
8
replies
640
views
Can't post a question?
Bioconductor
updated 4 weeks ago by • 0 • written 3 months ago by • 0
2
votes
2
replies
413
views
How to read OSCA book?
BIOCON OSCA Bioconductor
3 months ago zr • 0
1
vote
2
replies
414
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WARNING: No Bioconductor dependencies detected.
Bioconductor Biocon
4 months ago • updated 3 months ago katja.danielzik • 0
0
votes
2
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436
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concentration tables suitable as input for new packages?
Bioconductor
4 months ago katja.danielzik • 0
2
votes
0
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460
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News: Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025 Conference Bioconductor Community
4 months ago Maria Doyle ▴ 90
0
votes
5
replies
744
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 3 months ago by ▴ 760 • written 4 months ago by • 0
0
votes
0
replies
621
views
News: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference Bioconductor Community
4 months ago Maria Doyle ▴ 90
0
votes
1
reply
693
views
Unable to install/use limma
limma Bioconductor
updated 4 months ago by 67k • written 4 months ago by • 0
1
vote
2
replies
406
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Review process for delivering R packages
Bioconductor
4 months ago XFWu • 0
0
votes
1
reply
391
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News: BioCAsia 2024 Registration Now Open!
BioCAsia2024 Conference Community Bioconductor
4 months ago Maria Doyle ▴ 90
1
vote
3
replies
844
views
Non-zero exit status error when installing GenomeInfoDbData
DECIPHER GenomeInfoDbData Bioconductor GenomeInfoDb
written 4 months ago by • 0
0
votes
0
replies
367
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
NGS AI Bioconductor
updated 4 months ago by ▴ 10 • written 4 months ago by ▴ 180
0
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0
replies
282
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BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024 Community Conference Bioconductor
4 months ago Maria Doyle ▴ 90
0
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0
replies
313
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News: EuroBioC Updates: Important Deadlines
Conference EuroBioC2024 Bioconductor Community EuroBioC
4 months ago Maria Doyle ▴ 90
2
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4
replies
494
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Bioconductor Submission question
Bioconductor
4 months ago XFWu • 0
0
votes
0
replies
260
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News: Annual Nominations Open for CAB and TAB! Deadline Aug 31
TAB CAB Bioconductor
5 months ago shepherl 4.1k
0
votes
0
replies
277
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EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community Conference Bioconductor EuroBioC2024
5 months ago Maria Doyle ▴ 90
0
votes
4
replies
751
views
featureCounts error: Assertion `numOfBuckets > 0' failed
featureCounts Subread Bioconductor
5 months ago Jessica • 0
1
vote
0
replies
530
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News: Bioconductor Package Download Rate Limitation (HTTP 429)
downloads http429 http Bioconductor
5 months ago shepherl 4.1k
0
votes
2
replies
525
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Installing Bioconductor
Bioconductor
updated 5 months ago by ▴ 760 • written 6 months ago by • 0
0
votes
0
replies
308
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News: EuroBioC2024 Carpentries workshops Sep 2-3
Community Workshop Bioconductor EuroBioC2024
6 months ago Maria Doyle ▴ 90
0
votes
0
replies
295
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News: BioC2024 in-person registration closes soon (July 10)
BioC2024 Conference Bioconductor Community
6 months ago Maria Doyle ▴ 90
0
votes
0
replies
371
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Difference in Predictive component of PLS and OPLS Model
Metabolomics plotGrouper Bioconductor ropls PLSDAbatch
6 months ago devarti.mahakalkar • 0
0
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3
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515
views
How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
6 months ago Abiologist • 0
2
votes
2
replies
5.0k
views
Unable to install the package "tissuesGeneExpression"
bioconductor
updated 6 months ago by • 0 • written 7.5 years ago by ▴ 10
0
votes
1
reply
399
views
BiomaRt listAttributes - which are external ?
Bioconductor getBM
updated 6 months ago by 67k • written 6 months ago by • 0
4
votes
2
replies
835
views
Behaviour of featureCounts when quantifying multi-mapping reads
Bioconductor featurecounts subread
7 months ago • updated 6 months ago Rachael • 0
1
vote
5
replies
1.6k
views
Issues with installing Bioconductor packages (eg GEOquery)
GEOquery Bioconductor
updated 7 months ago by ★ 4.6k • written 7 months ago by • 0
0
votes
1
reply
335
views
How to access the Bioconductor in Windows
Bioconductor
updated 7 months ago by ★ 4.6k • written 7 months ago by • 0
0
votes
0
replies
291
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EuroBioC2024 Registration is Open!
Community Conference Bioconductor EuroBioC2024
7 months ago Maria Doyle ▴ 90
0
votes
3
replies
1.3k
views
ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 7 months ago by 4.1k • written 7 months ago by • 0
0
votes
0
replies
286
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News: Legacy Bioconductor Installation
Installation Bioconductor
7 months ago shepherl 4.1k
0
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0
replies
335
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology Bioconductor Network
7 months ago info ▴ 10
0
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1
reply
334
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News: Bioconductor Build System
Builds Bioconductor
written 7 months ago by 4.1k
0
votes
0
replies
381
views
News: BioC2024 Bioconductor Carpentries RNA-Seq Workshop July 22-23
BioC2024 Conference Bioconductor Community
7 months ago Maria Doyle ▴ 90
0
votes
1
reply
439
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor dada2
7 months ago • updated 6 months ago abhisek001 • 0
0
votes
6
replies
1.0k
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Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix Bioconductor
updated 7 months ago by • 0 • written 7 months ago by ▴ 10
3
votes
5
replies
946
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db Bioconductor
7 months ago Patadù ▴ 20
50 results • Page 1 of 1
Recent ...
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Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by James W. MacDonald 67k
How you analyze your data is up to you. But do note that Subset * Conditions implies that you want to find genes that respond to stimulus d…
Comment: MBDseq analysis using qsea package by kf • 0
Hi Matthias, Happy new year! I wondered if it is possible to retrieve normalized value from each samples? makeTable seems only return beta…
Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Quang • 0
Hi, James. I forgot to mention, but yes, I did run `DESeq2::DESeq()`. So, I ran `DESeq2::DESeqDataSetFromHTSeqCount`, then `DESeq2::DESeq()…
Answer: Why did PCA plots look exactly the same after adjusting for batch covariate in D by ATpoint ★ 4.6k
It's an FAQ in the vignette: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#why-after-vst-are-there-s…
Comment: Deseq2, enrichGO and ensembl ID by James W. MacDonald 67k
I am not sure I understand. You say that a unique Ensembl ID maps to multiple gene symbols. That doesn't mean you have two genes (it's just…
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A: Trajectory analysis for single cell sequencing
Answer: Annotation with org.Hs.eg.db Genome Build 38
Answer: Annotation with org.Hs.eg.db Genome Build 38
Answer: Considerations behind the choice of RNAseq Differential Expression Analysis Tool
A: goana limma- extract list of DE genes and genes in the enriched GO terms?
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