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Showing :
Biomart
•
reset
10
votes
10
replies
6.9k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 5 weeks ago by
juo5
• 0 • written 6 months ago by
Abhishek
▴ 10
5
votes
4
replies
9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP
rs id
Biomart
Chromosome
coordinates
updated 9 months ago by
James W. MacDonald
65k • written 3.7 years ago by
Mahan
• 0
7
votes
5
replies
6.9k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 6 months ago by
Ke
• 0 • written 2.0 years ago by
kieran.short
▴ 40
2
votes
2
replies
176
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 12 days ago by
James W. MacDonald
65k • written 13 days ago by
sansan
• 0
0
votes
3
replies
770
views
Error with makeTxDbFromBiomart
DEXSeq
biomaRt
updated 8 months ago by
Hervé Pagès
16k • written 9 months ago by
anavmar1
• 0
0
votes
3
replies
133
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 12 days ago by
James W. MacDonald
65k • written 12 days ago by
bas_work
▴ 30
7
votes
6
replies
4.1k
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 6 months ago by
Marcel Ramos
690 • written 20 months ago by
Recep
▴ 20
1
vote
4
replies
664
views
biomaRt code/getBM function no longer importing 'coding' sequence via seqType argument, "Invalid attribute(s): coding" error
biomaRt
7 months ago
andrew.b.kleist
▴ 10
1
vote
5
replies
603
views
Errors with makeTxDbFromBiomart
biomaRt
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
Jerina
▴ 10
3
votes
3
replies
9.3k
views
How to find rsID with biomaRt in R
biomaRt
updated 11 weeks ago by
James W. MacDonald
65k • written 3.2 years ago by
Federica
▴ 10
6
votes
9
replies
751
views
biomaRt has encountered an unknown server error.
biomaRt
host
useEnsembl
updated 3 months ago by
alexander3
• 0 • written 3 months ago by
Amparo
• 0
0
votes
3
replies
379
views
Obtaining rsIDs with ENSG and variant ID information
rsid
biomaRt
updated 4 months ago by
Robert Castelo
★ 3.3k • written 5 months ago by
bd2000
▴ 30
0
votes
2
replies
397
views
Problem with loading ensembl version 105.
biomaRt
4 months ago
RC
• 0
4
votes
2
replies
357
views
Enrichement with clusterProfiler and biomart
biomaRt
clusterProfiler
Zea_mays
updated 3 months ago by
Guido Hooiveld
★ 3.9k • written 3 months ago by
sansan
• 0
1
vote
4
replies
1.1k
views
Issue with Biomart- cannot access ensembl
biomaRT
updated 5 weeks ago by
James W. MacDonald
65k • written 4.0 years ago by
RJW63
• 0
1
vote
1
reply
388
views
Error with biomaRt
biomaRt
updated 3 months ago by
Mike Smith
★ 6.5k • written 3 months ago by
goldenboy
• 0
3
votes
2
replies
1.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG
DESeq2
biomaRt
clusterProfiler
org.Mm.eg.db
updated 8 months ago by
Guido Hooiveld
★ 3.9k • written 8 months ago by
Milan
▴ 10
0
votes
1
reply
698
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 4 months ago by
James W. MacDonald
65k • written 4 months ago by
ai.yaku
• 0
0
votes
3
replies
999
views
Problem installing biomaRt on mac
biomaRt
mac
updated 8 months ago by
15753563659
▴ 50 • written 17 months ago by
alfonsosaera
• 0
22
votes
15
replies
7.4k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt
RNASeqData
R
updated 5 months ago by
Marie
▴ 10 • written 2.1 years ago by
Dina
▴ 50
4
votes
4
replies
1.7k
views
biomaRt error: database disk image is malformed
biomaRt
updated 11 months ago by
Emile
• 0 • written 2.6 years ago by
victorcampos1995
▴ 10
0
votes
1
reply
615
views
Trouble using biomaRt to pull pathway genes from GO
GO
biomaRt
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
cstorer
• 0
0
votes
10
replies
807
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
5 months ago • updated 8 weeks ago
ScafioRuo
• 0
1
vote
2
replies
603
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
9 months ago
Miguel
• 0
0
votes
1
reply
220
views
biomaRt issue
biomaRt
updated 12 weeks ago by
Mike Smith
★ 6.5k • written 12 weeks ago by
Fariz
• 0
0
votes
1
reply
286
views
error in mapIds function
mapIds
biomaRt
updated 9 weeks ago by
Marcel Ramos
690 • written 9 weeks ago by
Regina
• 0
0
votes
2
replies
360
views
Biomart - upstream region of 'coding'
biomaRt
updated 7 months ago by
Mike Smith
★ 6.5k • written 7 months ago by
andrebolerbarros
▴ 20
4
votes
12
replies
956
views
Ensembl down???
biomaRt
5 months ago • updated 4 months ago
bas_work
▴ 30
0
votes
1
reply
827
views
multiple filters in biomaRt
biomaRt
updated 10 months ago by
RuBBiT0
▴ 10 • written 11 months ago by
Yijing
• 0
2
votes
4
replies
932
views
Use with_go along with other filters in getBM function
Annotation
biomaRt
11 months ago
RuBBiT0
▴ 10
0
votes
2
replies
453
views
Issue with BiomaRt's getLDS: Query ERROR: caught BioMart::Exception::Query: returning undef ... missing attributes for your exportable
biomaRt
11 weeks ago
eefernan5
• 0
0
votes
1
reply
138
views
Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 29 days ago by
James W. MacDonald
65k • written 4 weeks ago by
Reeya
• 0
0
votes
2
replies
696
views
biomart not ound some prevous release
biomart
rnaseq
written 5.2 years ago by
jarod_v6@libero.it
▴ 40
1
vote
2
replies
647
views
How to find stop codons for a list of genes
stopcodon
biomaRt
5 months ago
Marek Gierlinski
▴ 30
1
vote
7
replies
4.4k
views
Problems Installing biomaRt
biomaRt
updated 5 months ago by
James W. MacDonald
65k • written 2.1 years ago by
ksci
▴ 20
3
votes
2
replies
421
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl
biomaRt
5 months ago
henrydionne
▴ 10
0
votes
3
replies
1.4k
views
getLDS causes "biomaRt has encountered an unexpected server error"
biomaRt
written 12 months ago by
nhaus
▴ 30
0
votes
1
reply
960
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
written 2.5 years ago by
Lillian
• 0
1
vote
5
replies
419
views
BiomaRt download data error
biomaRt
updated 12 weeks ago by
Mike Smith
★ 6.5k • written 12 weeks ago by
Max Bone
• 0
2
votes
2
replies
639
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
3 months ago
bd2000
▴ 30
0
votes
0
replies
374
views
Getting CDS 5'/CDS3' incomplete flags info from ENSEMBL using biomaRt
biomaRt
8 months ago
ali.oghabian
• 0
1
vote
2
replies
789
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by
Mike Smith
★ 6.5k • written 11 months ago by
Yijing
• 0
1
vote
0
replies
203
views
News:
Ensembl 111 has been released
Ensembl
biomaRt
3 months ago
Benjamin
▴ 30
0
votes
1
reply
1.5k
views
News:
News:Ensembl 110 has been released
ensembldb
biomaRt
updated 9 months ago by
Michael Love
41k • written 9 months ago by
Benjamin
▴ 30
0
votes
3
replies
469
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
Marilyn
• 0
1
vote
1
reply
225
views
502 error biomaRt getLDS()
ensembldb
biomaRt
updated 11 weeks ago by
Robin
• 0 • written 12 weeks ago by
Pez
▴ 10
46 results • Page
1 of 1
Recent ...
Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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