Showing : Classification • reset
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BiocNeighbours Utility for k-Nearest Neighbour Classification
Classification BiocNeighbors
updated 12 months ago by 68k • written 12 months ago by ★ 1.6k
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0
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1.1k
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
5.4 years ago • updated 5.1 years ago whduke • 0
3
votes
2
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1.5k
views
Using deseq2 with batch effects and classification as downstream analysis
deseq2 batch effect classification
updated 7.1 years ago by 43k • written 7.2 years ago by • 0
1
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5
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1.7k
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CRImage createTrainingSet package is not available to install
classification segmentation cell types image analysis crimage
7.3 years ago Jenny.chien • 0
0
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0
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1.1k
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NMF pre-processsing effect on classification
NMF log2 classification bioconductor
7.5 years ago Seymoo • 0
0
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1
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1.4k
views
Classification with large number of qualitative variables
R classification qualitative variables high dimensionnal
updated 9.0 years ago by ▴ 130 • written 9.0 years ago by • 0
0
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0
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1.3k
views
Help in interpreting the plot of the function plotRLDF in limma package for microarray dataset concerning two categorical classes
limma plotRLDF microarray classification linear discriminant function
9.5 years ago svlachavas ▴ 840
0
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1
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1.4k
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Questions about the correct implementation of the function plotRLDF from R package limma regarding classification of a microarray dataset
limma microarray plotRLDF classification
9.5 years ago svlachavas ▴ 840
0
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0
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1.0k
views
Package for classifying two classes of sequences using hidden markov models?
hmm classification
9.7 years ago vinod.acear ▴ 50
1
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1
reply
2.8k
views
edgeR GLM fitted values
edgeR GLM classification rnaseq
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 10
1
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2
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2.2k
views
Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ▴ 840
0
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0
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1.8k
views
Error in R package "cancerclass" with function nvalidate
cancerclass bioconductor machinelearning classification
10.6 years ago svlachavas ▴ 840
0
votes
2
replies
1.5k
views
Ranked genes generated by learning datasets and Differentially expressed genes generated by original data
Classification Classification
updated 11.4 years ago by 21k • written 11.4 years ago by ★ 13k
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3
replies
2.0k
views
Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples
Classification CMA Classification CMA
updated 11.4 years ago by 21k • written 11.4 years ago by ★ 13k
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0
replies
1.3k
views
Course "CSAMA 2014" Computational Statistics for Genome Biology
Annotation Classification Clustering Annotation Classification Clustering
11.6 years ago Wolfgang Huber ★ 13k
0
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3
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2.0k
views
MLSeq Mathematical Concepts
Classification edgeR DESeq MLSeq Classification edgeR DESeq MLSeq
updated 11.6 years ago by ★ 13k • written 11.6 years ago by ★ 1.6k
0
votes
1
reply
2.0k
views
Support vector regression
Classification Regression Classification Regression
updated 11.7 years ago by ★ 13k • written 11.7 years ago by ★ 13k
0
votes
0
replies
1.4k
views
CSAMA 2014: Computational Statistics for Genome Biology - June 22-27, 2014
Sequencing Annotation Classification Clustering Sequencing Annotation Classification
11.8 years ago Wolfgang Huber ★ 13k
0
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0
replies
1.7k
views
CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics Classification Regression Genetics Classification Regression
12.6 years ago CAMDA 2013 ▴ 30
0
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0
replies
1.4k
views
CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
12.7 years ago CAMDA 2013 ▴ 30
0
votes
5
replies
3.9k
views
DESeq2
Normalization Classification Clustering DESeq cqn DESeq2 Normalization Classification cqn
updated 12.7 years ago by 43k • written 12.7 years ago by ★ 13k
0
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0
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2.5k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
12.7 years ago Matthew Thornton ▴ 390
0
votes
3
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3.5k
views
Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 13.0 years ago by 21k • written 13.0 years ago by ▴ 300
0
votes
3
replies
3.3k
views
PAMR- Package: Workflow and/or other methods
Classification Classification
updated 13.1 years ago by 21k • written 13.1 years ago by ▴ 70
0
votes
0
replies
1.8k
views
Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
13.1 years ago McGee, Monnie ▴ 300
0
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0
replies
1.2k
views
Questions regarding MCRestimate package
Classification MCRestimate Classification MCRestimate
13.4 years ago Guest User ★ 13k
0
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0
replies
1.8k
views
Overlapping ROC plots
Classification ROC graph Classification ROC graph
13.5 years ago Yadav Sapkota ▴ 130
0
votes
0
replies
940
views
Question about MCRestimate
Classification Classification
13.5 years ago ZHENG FU ▴ 10
0
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5
replies
5.2k
views
probability of a point membership to a certain cluster
Classification Classification
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 60
0
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0
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2.9k
views
'Empty model' error during Monte Carlo cross-validation of SVM classification with the CMA package
Microarray Classification limma CMA Microarray Classification limma CMA
14.8 years ago Santosh Patnaik ▴ 30
0
votes
4
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2.0k
views
RandomForest, supervised machine learning and uncertainty
GO Classification GO Classification
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 370
0
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0
replies
1.1k
views
Fwd: question regarding to MLInterface
Network Classification Network Classification
15.1 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
19k
views
1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
15.5 years ago David Lyon ▴ 340
0
votes
0
replies
1.7k
views
R Course 28-29 March in Heidelberg (EMBL)
Classification Classification
15.8 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
1.3k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.9 years ago by ★ 6.0k • written 15.9 years ago by ▴ 810
0
votes
1
reply
1.9k
views
Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 15.9 years ago by ★ 13k • written 15.9 years ago by 21k
0
votes
1
reply
1.4k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.9 years ago by ★ 6.0k • written 15.9 years ago by ▴ 810
0
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0
replies
1.6k
views
compare function in CMA package
Classification CMA Classification CMA
15.9 years ago Javier Pérez Florido ▴ 840
0
votes
0
replies
1.5k
views
Statistical approach to compare differentiall expressed gene lists
Microarray Classification Microarray Classification
16.0 years ago qinghua xu ▴ 110
0
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0
replies
1.3k
views
回复： 回复： : Patent issues of classification algorithms
Microarray Classification Microarray Classification
16.0 years ago qinghua xu ▴ 110
0
votes
0
replies
980
views
转发： 回复： Patent issues of classification algorithms
Microarray Classification Cancer Microarray Classification Cancer
16.0 years ago Martin Morgan 25k
0
votes
1
reply
1.5k
views
Sample size estimation for independent validation set
Microarray Classification PROcess Microarray Classification PROcess
updated 16.0 years ago by ▴ 110 • written 16.0 years ago by ▴ 10
0
votes
1
reply
1.4k
views
classification method applied to microarrays (CMA package)
Classification CMA Classification CMA
updated 16.1 years ago by ▴ 10 • written 16.1 years ago by ▴ 190
0
votes
0
replies
1.6k
views
Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing Genetics Classification Cancer PROcess Sequencing Genetics Classification
16.1 years ago Reek, J. ▴ 10
0
votes
2
replies
1.4k
views
OT: van 't Veer (2002) classifier
Classification Cancer Breast Classification Cancer Breast
updated 16.3 years ago by ★ 1.3k • written 16.3 years ago by ▴ 110
0
votes
0
replies
1.9k
views
CMA package: variable selection with limma
Microarray Classification Regression limma CMA Microarray Classification Regression limma
16.8 years ago Renaud Gaujoux ▴ 170
0
votes
0
replies
1.8k
views
Correcting for covariate (very unbalanced design)
Microarray Classification limma Microarray Classification limma
17.1 years ago Renaud Gaujoux ▴ 170
0
votes
3
replies
2.0k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
17.1 years ago Patrick Aboyoun ★ 1.6k
0
votes
3
replies
1.4k
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
17.2 years ago Scott Ochsner ▴ 300
0
votes
2
replies
2.1k
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
updated 17.2 years ago by ▴ 750 • written 17.2 years ago by ▴ 300
91 results • Page 1 of 2
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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