Bioconductor Conda

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biocinstaller installation install source conda

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by jol.espinoz ▴ 40

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deseq2 conda

6.3 years ago adam.cribbs ▴ 10

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diffHic conda

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by smithgr • 0

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DiffBind conda

updated 3.9 years ago by Rory Stark ★ 5.2k • written 3.9 years ago by Benjamin Ostendorf ▴ 90

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dada2 conda phyloseq

updated 3.9 years ago by James W. MacDonald 68k • written 3.9 years ago by Daniel • 0

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Conda affyio error

6.3 years ago benjamin.saintpierre • 0

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bioconductor biocinstaller installation conda

7.0 years ago jol.espinoz ▴ 40

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Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0

@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…

Comment: error in ChAMP loading file by 81becky • 0

hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…

Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k

From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…

Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0

Thank you, I will try this and see.

Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0

Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…

Votes

Answer: Efficiently working with HDF5-backed SingleCellExperiments

Efficiently working with HDF5-backed SingleCellExperiments

A: Effect of lfcThreshold on p-value in DESeq2

Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet

What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?

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Popular Question to Vincent J. Carey, Jr. 6.7k

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Scholar to James W. MacDonald 68k