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Conda
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reset
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Cannot use Bioconductor with new conda R installation?
bioconductor
biocinstaller
installation
conda
6.2 years ago
jol.espinoz
▴ 40
1
vote
1
reply
1.1k
views
diffbind installation through Conda fails
DiffBind
conda
updated 3.1 years ago by
Rory Stark
★ 5.2k • written 3.1 years ago by
Benjamin Ostendorf
▴ 90
1
vote
1
reply
3.6k
views
Setting up bioconductor on a Linux server using conda
dada2
conda
phyloseq
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
Daniel
• 0
0
votes
1
reply
1.1k
views
conda install of diffHic
diffHic
conda
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
smithgr
• 0
0
votes
1
reply
1.1k
views
Conda Env & biocLite("affyio") : < undefined symbol: gzclose >
Conda
affyio
error
5.5 years ago
benjamin.saintpierre
• 0
0
votes
3
replies
1.3k
views
Reason: image not found Error: package GenomeInfoDb could not be loaded
deseq2
conda
5.5 years ago
adam.cribbs
▴ 10
0
votes
5
replies
3.8k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller
installation
install
source
conda
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
jol.espinoz
▴ 40
7 results • Page
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Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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