Biostar DGEList

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2.8k

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edger DGEList org.hs.eg.db gene annotation

updated 16 months ago by IIart.hubII • 0 • written 5.2 years ago by svlachavas ▴ 800

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5.3k

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edger subsetting dgelist

updated 6.5 years ago by Gordon Smyth 47k • written 6.6 years ago by mnaymik ▴ 10

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1.7k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 6.5 years ago by Steve Lianoglou 13k • written 6.5 years ago by benedict.ng ▴ 20

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2.2k

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DGElist filter edgeR

updated 5.6 years ago by Gordon Smyth 47k • written 5.6 years ago by alakatos ▴ 120

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141

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edgeR Bioconductor Dseq2 dgelist

updated 6 weeks ago by Gordon Smyth 47k • written 6 weeks ago by Fiona • 0

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18k

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edgeR row.names DGEList

8.0 years ago ccheung • 0

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1.3k

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edgeR summarizedexperiment dgelist

4.8 years ago aljoscha.leusmann • 0

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455

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factors edgeR setup DGELIst

updated 20 months ago by Gordon Smyth 47k • written 21 months ago by Alex • 0

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2.2k

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egder dgelist group rnaseq

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by fawazfebin ▴ 50

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1.2k

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dgelist edger RnaSeqGeneEdgeRQL

updated 4.5 years ago by Gordon Smyth 47k • written 4.5 years ago by Kevin • 0

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1.0k

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edger DGElist

updated 3.8 years ago by Gordon Smyth 47k • written 3.8 years ago by naser.sadri • 0

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1.5k

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edger dgelist NA egsea

updated 5.0 years ago by Gordon Smyth 47k • written 5.0 years ago by belmore • 0

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580

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tree bootstrap dgelist plotmds

4.9 years ago Larry K. • 0

13 results • Page 1 of 1

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Comment: Which input file is used for DGEList in EgdeR? by mohammedtoufiq91 ▴ 10

Thank you @gordonsmyth My collaborator asked me to test this pipeline with `egdeR` package. We are interested at gene level analysis only…

Answer: Why in Bioconductor community people rarely upvote questions? by Gordon Smyth 47k

I think it is a good idea to start a discussion with correct information. Looking back through Bioconductor Support records, it is not at a…

Comment: How to identify top most variable genes from log2 normalized data? by Gordon Smyth 47k

Your code doesn't look right to me. I think you're using order() where sort() would be more appropriate. To order your cpm matrix by row v…

Comment: How to load fasta file with openPrimeR? by Santiago Edilberto • 0

> library(openPrimeR) There are missing/non-functioning external tools. To use the full potential of openPrimeR, please mak…

Answer: Which input file is used for DGEList in EgdeR? by Gordon Smyth 47k

I use and recommend featureCounts. Despite all that has been written on this topic, I still think that direct gene counting is faster and m…

Votes

Answer: Which input file is used for DGEList in EgdeR?

Answer: Identifying DEGs using lfcshrink()

Answer: Is this DESeq2 interactions design correct?

Comment: STRINGdb string_db$map error

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Awards • All

Scholar to James W. MacDonald 62k

Teacher to Michael Love 39k