Bioconductor DGEList

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22k

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edgeR row.names DGEList

10.3 years ago ccheung • 0

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7.5k

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edger subsetting dgelist

updated 8.8 years ago by Gordon Smyth 52k • written 8.8 years ago by mnaymik ▴ 10

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3.9k

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DGElist filter edgeR

updated 7.9 years ago by Gordon Smyth 52k • written 7.9 years ago by alakatos ▴ 130

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879

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edgeR Bioconductor Dseq2 dgelist

updated 2.4 years ago by Gordon Smyth 52k • written 2.4 years ago by Fiona • 0

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2.7k

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edgeR summarizedexperiment dgelist

7.1 years ago aljoscha.leusmann • 0

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3.7k

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egder dgelist group rnaseq

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by fawazfebin ▴ 60

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2.6k

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edger dgelist NA egsea

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by belmore • 0

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4.3k

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edger DGEList org.hs.eg.db gene annotation

updated 3.6 years ago by IIart.hubII • 0 • written 7.5 years ago by svlachavas ▴ 840

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3.0k

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edger raw reads TMM normalised values DGEList differential gene expression

updated 8.8 years ago by Steve Lianoglou ★ 13k • written 8.8 years ago by benedict.ng ▴ 30

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2.1k

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dgelist edger RnaSeqGeneEdgeRQL

updated 6.8 years ago by Gordon Smyth 52k • written 6.8 years ago by Kevin • 0

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2.3k

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edger DGElist

updated 6.1 years ago by Gordon Smyth 52k • written 6.1 years ago by naser.sadri • 0

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1.2k

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factors edgeR setup DGELIst

updated 4.0 years ago by Gordon Smyth 52k • written 4.0 years ago by Alex • 0

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543

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DGEList edgeR

13 months ago prity6459 • 0

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1.2k

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tree bootstrap dgelist plotmds

7.2 years ago Larry K. • 0

14 results • Page 1 of 1

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Comment: Discrepancies in normalised count data vs unnormalised by swbarnes2 ★ 1.4k

Well, that's going to make each sample normalize quite differently. So you should expect large difference between normalized and unnormali…

Comment: Can't install BioC packages (and manager) behind firewall by Marcel Ramos 700

Hi Delphine, Please make sure that your SSL certificates are up to date. Check with your system's administrator. Your browser may be usin…

Comment: Limma trend with limpa by Alejandro • 0

Dear Gordon, Thank you very much!

Answer: DESeq2 from phyloseq error by asafpr • 0

Apparently, I left this line: ```r setClassUnion("ExpData", c("matrix", "SummarizedExperiment")) ``` to patch the ExpData issue which was …

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply! There are some pretty big discrepancies in the total raw counts between samples: ![enter image description here…

Votes

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

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Popular Question to bhanu.chandra1 • 0

Popular Question to James W. MacDonald 68k