Bioconductor DTU

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1.7k

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DTU DEXSeq RNADTU

updated 3.9 years ago by Alejandro Reyes ★ 1.9k • written 4.3 years ago by Nirad ▴ 10

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1.9k

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DESeq2 DRIMSeq dtu RNASeq

4.4 years ago sbcn ▴ 80

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2.4k

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edgeR DEXSeq IsoformSwitchAnalyzeR DTU

updated 4.5 years ago by k.vitting.seerup ▴ 120 • written 4.6 years ago by jbono ▴ 10

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1.7k

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DRIMSeq R DTU technical replicates deseq2

updated 5.4 years ago by Kevin Blighe ★ 4.0k • written 5.4 years ago by poecile.pal • 0

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3.1k

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RATs RNA-Seq Isoforms DTU expression

updated 6.4 years ago by fruce_ki ▴ 20 • written 6.4 years ago by UserAnonyme • 0

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1.8k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 6.6 years ago by Michael Love 43k • written 6.9 years ago by fiona.dick91 ▴ 60

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4.6k

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tximport dtu salmon TPM rnaseqDTU

written 6.7 years ago by fiona.dick91 ▴ 60

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3.3k

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rnaseqDTU dtu

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by rbenel ▴ 50

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1.6k

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DTU DRIMSeq rnaseqDTU

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by fiona.dick91 ▴ 60

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2.5k

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drimseq stageR dtu salmon rna seq

updated 7.4 years ago by Koen Van den Berge ▴ 180 • written 7.4 years ago by fiona.dick91 ▴ 60

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1.7k

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drimseq DTU

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by somseeprags ▴ 10

11 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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