Bioconductor Deconvolution

Showing : Deconvolution • reset

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735

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limma microarray deconvolution cell type

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by antgomo • 0

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2.2k

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deconvolution rna-seq

updated 8.6 years ago by Steve Lianoglou ★ 13k • written 8.6 years ago by Pauly Lin ▴ 150

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1.1k

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deseq2 deconvolution rnaseq

updated 5.9 years ago by Michael Love 41k • written 5.9 years ago by jennyl.smith12 • 0

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1.2k

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deconvolution r scRNAseq bioinformatics

2.2 years ago Hasan Alanya • 0

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1.3k

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deseq2 deconvolution normalization limma

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by bruce.moran ▴ 30

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1.6k

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deconvolution cellmix

8.9 years ago carleshf ▴ 10

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917

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Deconvolution

2.4 years ago Barista • 0

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1.0k

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deconvolution rnaseq psea

6.2 years ago WouterDeCoster ▴ 130

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899

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deconvolution methods

6.2 years ago casey.rimland ▴ 150

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873

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methylCC deconvolution methylation dmrseq serum

4.0 years ago marcin.bazyliszek • 0

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653

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PSEA Deconvolution

3.9 years ago kavator ▴ 30

11 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0