Biostar Deconvolution

Showing : Deconvolution • reset

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606

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deseq2 deconvolution normalization limma

updated 3.0 years ago by Michael Love 35k • written 3.0 years ago by bruce.moran ▴ 30

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220

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limma microarray deconvolution cell type

updated 23 months ago by Gordon Smyth 44k • written 23 months ago by antgomo • 0

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456

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deseq2 deconvolution rnaseq

updated 3.6 years ago by Michael Love 35k • written 3.6 years ago by jennyl.smith12 • 0

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531

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deconvolution rnaseq psea

4.0 years ago WouterDeCoster ▴ 130

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206

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PSEA Deconvolution

19 months ago kavator ▴ 20

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1.4k

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deconvolution rna-seq

updated 6.3 years ago by Steve Lianoglou 13k • written 6.3 years ago by Pauly Lin ▴ 120

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166

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Deconvolution

9 weeks ago Barista • 0

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424

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deconvolution methods

4.0 years ago casey.rimland ▴ 130

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268

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methylCC deconvolution methylation dmrseq serum

21 months ago marcin.bazyliszek • 0

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1.2k

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deconvolution cellmix

6.6 years ago carleshf ▴ 10

10 results • Page 1 of 1

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Answer: Differential Splicing using edgeR by James W. MacDonald 58k

I believe the help page for `diffSpliceDGE` accurately represents what you should be using as input. ``` ## after running > example(…

Comment: TSSEscore function in ATACseqQC package by Ou, Jianhong ★ 1.3k

Hi Yu-Yu, May I know the version of ATACseqQC? Thank you. Jianhong.

Comment: using the goana function from edgeR by Gordon Smyth 44k

`goana` does an over-representation analysis so the User's Guide wording seems correct. If you don't use the extra capabilities of `goana` …

Answer: How to find the BSgenome object that provided the seqinfo of a GRanges object ? by Hervé Pagès 15k

Yup, `getBSgenome()`.

Comment: using the goana function from edgeR by David Rengel ▴ 70

Thanks a lot Gordon, I misunderstood the way the analysis are performed, I see now it works the way topGO does. It is nice to have annotat…

Votes

C: edgeR design matrix and contrasts: how to make contrast between groups that aren

Answer: Why is "SimpleList" not inheriting "list" ?

C: Reading gff files in R

A: Reading gff files in R

Comment: Warning messages on Apple M1 BigSur

Awards • All

Scholar to James W. MacDonald 58k

Popular Question to Ou, Jianhong ★ 1.3k