Bioconductor EGSEA

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1.8k

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EGSEA write

updated 7.2 years ago by Monther Alhamdoosh ▴ 40 • written 7.2 years ago by mforde84 ▴ 20

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ssgsea gsva piano egsea

updated 4 months ago by amin8w ▴ 10 • written 6.8 years ago by sina.nassiri ▴ 130

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EGSEA

updated 3.5 years ago by Martin • 0 • written 4.8 years ago by pgugger ▴ 70

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EGSEA EGSEA123

updated 6.4 years ago by Monther Alhamdoosh ▴ 40 • written 6.4 years ago by Jenny Drnevich ★ 2.0k

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1.9k

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pathways gsea egsea gage

updated 7.6 years ago by Monther Alhamdoosh ▴ 40 • written 7.6 years ago by yingchen • 0

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EGSEA gene set testing vooma limma voom gsea

7.3 years ago • updated 7.2 years ago Pekka Kohonen ▴ 190

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1.9k

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limma KEGGREST EGSEA

updated 22 months ago by shepherl 3.8k • written 22 months ago by Jenny Drnevich ★ 2.0k

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EGSEA edgeR biomaRt limma RNA-seq

4.7 years ago fgol ▴ 10

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egsea

7.0 years ago irizarnaunk • 0

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745

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egsea EGSEA123

12 months ago neilzhao ▴ 30

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EGSEA R bioconductor

6.6 years ago RV • 0

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edger dgelist NA egsea

updated 6.2 years ago by Gordon Smyth 50k • written 6.2 years ago by belmore • 0

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373

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EGSEA EGSEAdata EGSEA123 DifferentialExpression

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by Tiago • 0

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267

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EGSEA

updated 5 months ago by James W. MacDonald 65k • written 5 months ago by cverschoor • 0

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design and contrast matrix egsea

6.3 years ago Stefano Mangiola ▴ 10

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715

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egsea limma

4.6 years ago rocanja ▴ 60

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994

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EGSEA KEGG EGSEAdata

6.2 years ago john.thompson ▴ 10

17 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0