Showing : Ensembldb • reset
1
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0
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75
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News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
7 days ago Aleena ▴ 30
2
votes
5
replies
318
views
get BM error
ensembldb
updated 26 days ago by 66k • written 27 days ago by • 0
0
votes
1
reply
194
views
Convert transcriptomic bam to genomic bam?
ensembldb transcriptome genome coordinateconversion
updated 7 weeks ago by 42k • written 7 weeks ago by ▴ 10
0
votes
1
reply
249
views
Canonical transcripts Mus musculus
TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus
updated 3 months ago by 66k • written 3 months ago by ▴ 10
2
votes
3
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366
views
seqlevelsStyle() not working
ensembldb genomei GenomeInfoDb
3 months ago Kai Hu ▴ 70
1
vote
1
reply
249
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 3 months ago by • 0 • written 3 months ago by ▴ 10
2
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3
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525
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
5 months ago R_Page • 0
2
votes
5
replies
863
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
6 months ago j_denton • 0
0
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4
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593
views
Retrieve gene ontologies (GO) for genes and a species by REST API
GO ensembldb
7 months ago Rockbar • 0
0
votes
10
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862
views
ensembldb::getGenomeTwoBitFile() not working for many species
AnnotationHubSoftware ensembldb
updated 8 months ago by 66k • written 8 months ago by • 0
3
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1
reply
1.5k
views
Mouse to Human Genes using bioconductor
ensembldb
updated 9 months ago by 66k • written 9 months ago by ▴ 10
0
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1
reply
507
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Relationship between gene_id and transcript_id genomic coordinates
Rsubread ensembldb
updated 9 months ago by 66k • written 9 months ago by • 0
0
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1
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1.6k
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News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 10 months ago by 42k • written 10 months ago by ▴ 30
7
votes
6
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4.3k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 7 months ago by 700 • written 21 months ago by ▴ 20
0
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2
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2.7k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 2.2 years ago by • 0
9
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11
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6.0k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 9 weeks ago by 3.9k • written 2.3 years ago by ▴ 40
0
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1
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993
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.5 years ago by • 0
7
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40
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5.8k
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 4 hours ago by ★ 2.0k • written 5.5 years ago by ★ 4.0k
18 results • Page 1 of 1
Recent ...
Replies
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k
Yes, you can use `limma`.
Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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