Bioconductor Ensembldb

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5.6k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 29 days ago by Shiva • 0 • written 5.4 years ago by Guido Hooiveld ★ 3.9k

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5.8k

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Ensembl Rstudio ensembldb AnnotationHub ensdb

updated 7 weeks ago by shepherl 3.9k • written 2.3 years ago by jon.klonowski ▴ 40

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311

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ensembldb genomei GenomeInfoDb

12 weeks ago Kai Hu ▴ 70

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4.1k

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biomaRt ensembldb UniProt.ws

updated 6 months ago by Marcel Ramos 690 • written 20 months ago by Recep ▴ 20

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223

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TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus

updated 11 weeks ago by James W. MacDonald 65k • written 11 weeks ago by ramonmassoni ▴ 10

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1.3k

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ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Max ▴ 10

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500

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Rstudio cDNA ensembldb NCBI

5 months ago R_Page • 0

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243

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ensembldb

updated 8 days ago by James W. MacDonald 65k • written 9 days ago by Fara • 0

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169

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ensembldb transcriptome genome coordinateconversion

updated 4 weeks ago by Michael Love 41k • written 4 weeks ago by saadmurtazakhan ▴ 10

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487

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Rsubread ensembldb

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by Ya • 0

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836

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AnnotationHubSoftware ensembldb

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by cjag • 0

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792

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RStudio convert ensembldb NCBI

6 months ago • updated 5 months ago j_denton • 0

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555

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GO ensembldb

6 months ago Rockbar • 0

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961

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Annotation biomaRt ensembldb

written 2.5 years ago by Lillian • 0

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225

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ensembldb biomaRt

updated 11 weeks ago by Robin • 0 • written 12 weeks ago by Pez ▴ 10

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2.6k

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ensembldb SNP SNPData genomes

written 2.2 years ago by Weiqiong • 0

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1.5k

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ensembldb biomaRt

updated 9 months ago by Michael Love 41k • written 9 months ago by Benjamin ▴ 30

17 results • Page 1 of 1

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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Votes

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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