Bioconductor Epigenomics

Showing : Epigenomics • reset

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854

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methylation epigenomics slurm mpi methylmix

updated 3.7 years ago by Kevin Blighe ★ 3.9k • written 3.7 years ago by parra.sev ▴ 20

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1.3k

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roadmap project annotationhub epigenomics big data

updated 8.0 years ago by Valerie Obenchain ★ 6.8k • written 8.0 years ago by kevin.rue ▴ 350

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3.0k

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ChAMP methylationepic epicarray epigenomics

updated 6.6 years ago by rcavalca ▴ 140 • written 6.6 years ago by karthikrpad ▴ 10

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936

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cancer networks genomics epigenomics Job

4.4 years ago • updated 4.3 years ago marschaefer • 0

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1.5k

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conference transcription epigenomics visualization infrastructure News

7.8 years ago Matthew Ritchie ▴ 1000

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1.3k

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job bioinformatics microbiome metagenomics epigenomics Job

6.2 years ago Jenny Drnevich ★ 2.0k

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4.4k

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AnnotationHub Epigenomics BigData RoadMap Project NIH Tutorial

updated 7.0 years ago by vanesa_1230 • 0 • written 8.9 years ago by Sonali Arora ▴ 390

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1.1k

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epigenomics RNA methylation RNA dynamics chromatin computational biology Job

6.4 years ago mattia pelizzola ▴ 200

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1.3k

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microbiome epigenomics bioinformatics analyst NGS Job

6.1 years ago Jenny Drnevich ★ 2.0k

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912

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bioinformatician job epigenomics hts Job

5.4 years ago mattia pelizzola ▴ 200

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1.7k

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sequencing transcription epigenomics visualization infrastructure News

8.9 years ago • updated 8.7 years ago Matthew Ritchie ▴ 1000

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1.7k

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rnaseq single cell bioinformatics R epigenomics Job

8.5 years ago Garry Myers • 0

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0