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FlowCytometry
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0
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113
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Macsquant FCS in read.FCS & opencyto
FlowCytometry
flowWorkspace
flowCore
6 weeks ago
taylor.witte
• 0
0
votes
0
replies
275
views
News:
Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometryData
FlowCytometry
4 months ago
info
▴ 10
0
votes
0
replies
356
views
Merging 2 staining panels
FlowCytometry
flowCore
14 months ago
michaela.gregorova13
• 0
2
votes
1
reply
896
views
How to modify a compensation matrix in an fcs file
flowCore
FlowCytometry
17 months ago
aguirre
▴ 20
0
votes
0
replies
551
views
How to fix Flow-Data autoplot heat map
FlowCytometry
flowCore
openCyto
ggcyto
18 months ago
Dennis.hinkel
• 0
1
vote
1
reply
619
views
creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry
Opencyto
updated 18 months ago by
Kevin Blighe
★ 3.9k • written 18 months ago by
Noël
• 0
0
votes
0
replies
454
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto
FlowCytometry
18 months ago
Noël
• 0
2
votes
9
replies
1.5k
views
Error when plotting flow cytometry data
FlowCytometry
flowCore
ggcyto
updated 19 months ago by
SamGG
▴ 350 • written 19 months ago by
alex
• 0
0
votes
0
replies
549
views
Reducing/sampling number of FCS events
FlowCytometry
flowCore
2.3 years ago
markkelly1983
▴ 20
0
votes
0
replies
697
views
Job:
Bioconductor developer
FlowCytometry
flowCore
2.4 years ago
markkelly1983
▴ 20
0
votes
1
reply
1.1k
views
[flowSOM] extracting data from tree
flowcytometry
flowSOM
flowSET
flowFrame
5.1 years ago
fabrizio.benedetti.82
• 0
0
votes
6
replies
2.1k
views
spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore
spillover
flowcytometry
updated 6.2 years ago by
Samuel Ahuno
• 0 • written 8.2 years ago by
Daniel Prieto
• 0
0
votes
1
reply
1.1k
views
[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore
flowcytometry
updated 6.3 years ago by
Jiang, Mike
★ 1.3k • written 6.3 years ago by
max.zhao
• 0
0
votes
1
reply
1.2k
views
Installation of "flowWorkspace" on Ubuntu fails
bioconductor
R
flowcytometry
7.2 years ago
mo
• 0
0
votes
2
replies
2.0k
views
Scaling fcs files with flowCore
flowCore
flowcytometry
8.1 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.9k
views
FlowWorkspace and norm2Filter
flowcytometry
opencyto
flowworkspace
flowcore
8.2 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.2k
views
FlowViz package question
flowviz
flowcytometry
8.2 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.4k
views
read.flowSet error Error: vector::_M_range_check
software error
read.flowset()
read.fcs
flowcore
flowcytometry
8.2 years ago
e.bestion
• 0
1
vote
2
replies
1.2k
views
openCyto - samples with low cell counts
flowcytometry
opencyto
8.3 years ago
Jiang, Mike
★ 1.3k
0
votes
1
reply
1.3k
views
samples are reordered in read.flowSet
flowcore
flowcytometry
8.8 years ago
Jiang, Mike
★ 1.3k
0
votes
2
replies
2.0k
views
xyplot can't find channel (flowViz)
flowcore
flowviz
flowcytometry
updated 8.8 years ago by
Jiang, Mike
★ 1.3k • written 8.8 years ago by
ericjkort
• 0
0
votes
0
replies
1.3k
views
Re: FlowStats help
flowclust
opencyto
flowcytometry
9.2 years ago
Jiang, Mike
★ 1.3k
1
vote
1
reply
1.5k
views
flowCore: using read.FCS with which.lines is not time efficient?
flowcore
read.FCS
flowcytometry
updated 9.3 years ago by
Jiang, Mike
★ 1.3k • written 9.5 years ago by
skiaphrene
▴ 10
4
votes
1
reply
1.7k
views
News:
New Flow Cytometry Data Analysis Framework
flowcore
flowcytometry
opencyto
new
News
9.6 years ago
Greg Finak
▴ 150
0
votes
0
replies
1.2k
views
FlowCore - reading in flowSets
FlowCytometry
PROcess
flowCore
FlowCytometry
PROcess
flowCore
11.3 years ago
Pieter Coussement
▴ 30
25 results • Page
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
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by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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