Showing : FlowCytometry • reset
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Macsquant FCS in read.FCS & opencyto
FlowCytometry flowWorkspace flowCore
6 weeks ago taylor.witte • 0
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274
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News: Online course - FLOW CYTOMETRY DATA ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometryData FlowCytometry
4 months ago info ▴ 10
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355
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Merging 2 staining panels
FlowCytometry flowCore
14 months ago michaela.gregorova13 • 0
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1
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895
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How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
17 months ago aguirre ▴ 20
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551
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How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
18 months ago Dennis.hinkel • 0
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1
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619
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creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
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454
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gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
18 months ago Noël • 0
2
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9
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1.5k
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Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 19 months ago by ▴ 350 • written 19 months ago by • 0
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549
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Reducing/sampling number of FCS events
FlowCytometry flowCore
2.3 years ago markkelly1983 ▴ 20
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697
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Job: Bioconductor developer
FlowCytometry flowCore
2.4 years ago markkelly1983 ▴ 20
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1
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1.1k
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[flowSOM] extracting data from tree
flowcytometry flowSOM flowSET flowFrame
5.1 years ago fabrizio.benedetti.82 • 0
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6
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2.1k
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spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 6.2 years ago by • 0 • written 8.2 years ago by • 0
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1
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1.1k
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[flowCore] linearization of logarithmic data seems to be calculated wrong
flowcore flowcytometry
updated 6.3 years ago by ★ 1.3k • written 6.3 years ago by • 0
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1
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1.2k
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Installation of "flowWorkspace" on Ubuntu fails
bioconductor R flowcytometry
7.2 years ago mo • 0
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2
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2.0k
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Scaling fcs files with flowCore
flowCore flowcytometry
8.1 years ago Jiang, Mike ★ 1.3k
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1
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1.9k
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FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.2 years ago Jiang, Mike ★ 1.3k
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1
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1.2k
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FlowViz package question
flowviz flowcytometry
8.2 years ago Jiang, Mike ★ 1.3k
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1
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1.4k
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read.flowSet error Error: vector::_M_range_check
software error read.flowset() read.fcs flowcore flowcytometry
8.2 years ago e.bestion • 0
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2
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1.2k
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openCyto - samples with low cell counts
flowcytometry opencyto
8.3 years ago Jiang, Mike ★ 1.3k
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1
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1.3k
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samples are reordered in read.flowSet
flowcore flowcytometry
8.8 years ago Jiang, Mike ★ 1.3k
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2
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2.0k
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xyplot can't find channel (flowViz)
flowcore flowviz flowcytometry
updated 8.8 years ago by ★ 1.3k • written 8.8 years ago by • 0
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0
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1.3k
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Re: FlowStats help
flowclust opencyto flowcytometry
9.2 years ago Jiang, Mike ★ 1.3k
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1
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1.5k
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flowCore: using read.FCS with which.lines is not time efficient?
flowcore read.FCS flowcytometry
updated 9.3 years ago by ★ 1.3k • written 9.5 years ago by ▴ 10
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1
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1.7k
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News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
9.6 years ago Greg Finak ▴ 150
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0
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1.2k
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FlowCore - reading in flowSets
FlowCytometry PROcess flowCore FlowCytometry PROcess flowCore
11.3 years ago Pieter Coussement ▴ 30
25 results • Page 1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
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Comment: Too many significant genes when integrating gtex and tcga
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