Bioconductor GenomicInteractions

Showing : GenomicInteractions • reset

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401

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InteractionSet subsetByOverlaps GenomicInteractions

9 months ago LaureTomas ▴ 10

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606

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

2.8 years ago koushik • 0

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1.6k

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diffHic GenomicInteractions edgeR HiC cooler

updated 3.7 years ago by Aaron Lun ★ 28k • written 3.7 years ago by Marco Blanchette ▴ 30

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1.0k

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duplicate GenomicInteractions

3.9 years ago dogancan • 0

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798

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GenomicInteractions

4.1 years ago chang.jiaming • 0

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1.1k

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GenomicInteractions gviz

updated 4.2 years ago by liz.ingsimmons ▴ 140 • written 4.2 years ago by Marco Blanchette ▴ 30

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770

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genomicInteractions annotation

updated 4.9 years ago by liz.ingsimmons ▴ 140 • written 4.9 years ago by ls760 • 0

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1.4k

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GenomicInteractions Gviz

updated 5.0 years ago by liz.ingsimmons ▴ 140 • written 5.0 years ago by Nik dAK ▴ 10

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1.2k

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genomicinteractions gviz interactionset

updated 5.4 years ago by liz.ingsimmons ▴ 140 • written 5.4 years ago by ferbecneu • 0

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1.3k

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genomicinteractions

6.6 years ago sarvesh.nikumbh ▴ 10

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2.5k

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gviz genomicinteractions

8.0 years ago enricoferrero ▴ 660

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1.1k

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genomicinteractions GRanges

updated 8.2 years ago by liz.ingsimmons ▴ 140 • written 8.2 years ago by tangming2005 ▴ 190

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2.0k

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GenomicInteractions

updated 8.3 years ago by Malcolm Perry ▴ 40 • written 8.3 years ago by tangming2005 ▴ 190

13 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

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Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length