Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
HiC
•
reset
0
votes
2
replies
292
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 5 months ago by
IsMM
• 0
0
votes
0
replies
799
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
22 months ago
xubeisi
• 0
0
votes
0
replies
814
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
2.4 years ago
Ankit
▴ 20
0
votes
3
replies
836
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 24 months ago by
merve.sahn
• 0 • written 3.5 years ago by
mtS
• 0
0
votes
0
replies
552
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
3.5 years ago
changxu.fan
▴ 20
1
vote
7
replies
1.6k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 3.7 years ago by
Aaron Lun
★ 28k • written 3.7 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
831
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 4.0 years ago by
Aaron Lun
★ 28k • written 4.0 years ago by
girardot
• 0
0
votes
1
reply
858
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 4.6 years ago by
Kevin Blighe
★ 3.9k • written 4.6 years ago by
c.chakraborty
• 0
0
votes
3
replies
1.5k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 5.3 years ago by
bioparticles.melly
• 0 • written 5.3 years ago by
m.t.lorenc
• 0
0
votes
9
replies
1.5k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
mictadlo
▴ 10
0
votes
1
reply
905
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
5.4 years ago
mictadlo
▴ 10
1
vote
1
reply
1.3k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
gryderart
• 0
2
votes
1
reply
1.2k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
hwick1
▴ 20
0
votes
8
replies
1.6k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
hwick1
▴ 20
2
votes
2
replies
1.4k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
6.8 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
1.6k
views
GOTHiC hg19 error
GOTHiC
hic
8.6 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
2.4k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.7 years ago • updated 8.6 years ago
Bogdan
▴ 670
17 results • Page
1 of 1
Recent ...
Replies
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
Awards
• All
Popular Question
to
Theo
▴ 10
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Popular Question
to
shepherl
3.9k
Popular Question
to
siajunren
• 0
Locations
• All
France,
3 minutes ago
United Kingdom,
8 minutes ago
United Kingdom,
16 minutes ago
Wageningen University, Wageningen, the Netherlands,
22 minutes ago
United Kingdom,
23 minutes ago
Traffic: 754 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6