Showing : KEGGREST • reset
4
votes
2
replies
490
views
Cannabis and KEGGgraph
KEGGREST GenomicDistributionsData KEGGgraph KEGG
updated 6 months ago by ★ 4.1k • written 6 months ago by ▴ 30
0
votes
0
replies
540
views
Include or exclude N/A genes (those without any KEGG annotation) when running Wilcox test?
KEGGREST KEGG RNASeq
12 months ago mch • 0
1
vote
1
reply
1.9k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 19 months ago by ★ 4.1k • written 19 months ago by ▴ 10
0
votes
2
replies
1.9k
views
keggList curl::curl_fetch_memory(url, handle = handle) ERROR
URL KEGGREST
20 months ago jonathanlecoy • 0
3
votes
13
replies
3.1k
views
pathview says my nonmodel species is unknown: "species invalid"
KEGGREST KEGG gage pathview
2.2 years ago • updated 21 months ago nute11a ▴ 10
0
votes
3
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1.2k
views
ROntoTools: Set returned by keggPathwayGraphs is missing 121 pathways reported by keggPathwayNames
KEGGREST ROntoTools KEGG KEGGgraph
2.3 years ago abf ▴ 30
0
votes
3
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2.4k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma KEGGREST EGSEA
updated 2.4 years ago by 4.1k • written 2.4 years ago by ★ 2.0k
0
votes
0
replies
1.2k
views
How to compute the "completeness" of a KEGG module using a set of KEGG orthologs? (Module Completion Ratio)
KEGG KEGGREST keggorthology Metagenomics
3.6 years ago jol.espinoz ▴ 40
2
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1
reply
1.1k
views
GSEA generate genesets
pathway KEGGREST GSEA
updated 3.6 years ago by ★ 4.0k • written 3.6 years ago by • 0
0
votes
1
reply
2.1k
views
KEGGREST keggGet fails to retrieve modules, but not pathways
keggrest software error pathways modules kegg
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
0
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2
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1.1k
views
how can I find a pathway
kegg KEGGREST
5.0 years ago Bioinformatics ▴ 30
1
vote
8
replies
2.3k
views
KEGGREST mapping between genes and pathways
keggrest mapping genes to pathways
updated 5.7 years ago by 51k • written 5.7 years ago by ▴ 10
3
votes
4
replies
10k
views
How i can get a list of KEGG pathways and its list of genes?
keggrest
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 10
0
votes
1
reply
930
views
KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
6.5 years ago doctor.dee005 • 0
1
vote
9
replies
3.3k
views
Gene-Metabolite and Metabolite-Pathway network from KEGG with KEGGREST
KEGG keggrest
updated 6.6 years ago by ▴ 10 • written 6.6 years ago by ▴ 20
1
vote
4
replies
2.4k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest chemminer fmcsr graph
written 6.7 years ago by • 0
2
votes
1
reply
1.1k
views
How can I remove the ellipsis and get the complete sequence and results?
keggrest biostrings
updated 6.8 years ago by 4.1k • written 6.8 years ago by ▴ 10
2
votes
1
reply
1.6k
views
Possible bug: outdated result from listDatabases()
KEGGREST bug
updated 7.2 years ago by ▴ 50 • written 7.2 years ago by • 0
0
votes
2
replies
2.8k
views
Accessing KEGG (errors w/ KEGGREST)
KEGG keggrest
updated 7.8 years ago by 51k • written 7.8 years ago by • 0
0
votes
2
replies
1.4k
views
Retrieve KEGG from protein GI
R KEGG KEGGREST
7.9 years ago felipelira3 • 0
0
votes
2
replies
3.4k
views
Get the reactions for a organism using KEGGREST
keggrest
8.5 years ago kjboteroo • 0
0
votes
11
replies
5.0k
views
Examples from keggList in KEGGREST don't all work
software error keggrest
8.7 years ago Bryan Hanson • 0
0
votes
1
reply
1.8k
views
Problem in KEGGREST package function keggConv
KEGGREST keggConv
updated 8.8 years ago by ★ 8.2k • written 8.8 years ago by ▴ 120
2
votes
15
replies
4.3k
views
Timeout error in kegga() using edgeR
edger kegga keggrest
8.8 years ago Likai Mao ▴ 40
1
vote
1
reply
1.6k
views
KEGGREST fail to fetch human genes link to pathway
keggrest clusterProfiler
updated 9.2 years ago by ★ 8.2k • written 9.2 years ago by ★ 1.2k
0
votes
2
replies
7.9k
views
Using Keggrest to convert ncbi gene IDs to kegg orthology and pathway
keggrest kegg keggorthology
updated 10.0 years ago by 67k • written 10.0 years ago by ▴ 100
0
votes
4
replies
3.2k
views
Error: could not find function "plotPCA"
GO affycoretools KEGGREST GO affycoretools KEGGREST
updated 10.5 years ago by 42k • written 10.5 years ago by ▴ 50
0
votes
1
reply
1.6k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 10.9 years ago by 67k • written 10.9 years ago by ★ 13k
0
votes
1
reply
1.6k
views
Error message using arrayweights
GO Cancer mouse4302 KEGGREST GO Cancer mouse4302 KEGGREST
updated 10.9 years ago by ▴ 1000 • written 10.9 years ago by ▴ 80
0
votes
0
replies
1.8k
views
Pathview question
KEGGREST pathview KEGGREST pathview
11.1 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
2.0k
views
trouble reading DNA stringset from keggGet function
PROcess KEGGREST PROcess KEGGREST
updated 11.2 years ago by 67k • written 11.2 years ago by ★ 13k
0
votes
7
replies
5.0k
views
Simple pathway enrichment analysis for gene lists
Microarray Category gage KEGGREST ROntoTools Microarray Category gage KEGGREST ROntoTools
updated 11.2 years ago by ▴ 470 • written 11.2 years ago by ▴ 660
0
votes
0
replies
1.8k
views
SPIA algorithm organisms not included already in the SPIA package
Organism SPIA goseq KEGGREST Organism SPIA goseq KEGGREST
11.7 years ago Tarca, Adi ▴ 570
0
votes
0
replies
1.2k
views
KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
11.8 years ago Dan Tenenbaum ★ 8.2k
34 results • Page 1 of 1
Recent ...
Replies
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Thank you!
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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