Showing : KEGGREST • reset
4
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2
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1.0k
views
Cannabis and KEGGgraph
KEGGREST GenomicDistributionsData KEGGgraph KEGG
updated 21 months ago by ★ 4.1k • written 21 months ago by ▴ 30
0
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0
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922
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Include or exclude N/A genes (those without any KEGG annotation) when running Wilcox test?
KEGGREST KEGG RNASeq
2.3 years ago mch • 0
1
vote
1
reply
3.6k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 2.8 years ago by ★ 4.1k • written 2.8 years ago by ▴ 10
0
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2
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2.7k
views
keggList curl::curl_fetch_memory(url, handle = handle) ERROR
URL KEGGREST
2.9 years ago jonathanlecoy • 0
3
votes
13
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4.5k
views
pathview says my nonmodel species is unknown: "species invalid"
KEGGREST KEGG gage pathview
3.5 years ago • updated 3.0 years ago nute11a ▴ 10
0
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3
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1.7k
views
ROntoTools: Set returned by keggPathwayGraphs is missing 121 pathways reported by keggPathwayNames
KEGGREST ROntoTools KEGG KEGGgraph
3.5 years ago abf ▴ 30
0
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3
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3.4k
views
Problem in kegga() and others getting data from KEGG after switch from http to https
limma KEGGREST EGSEA
updated 3.6 years ago by 4.3k • written 3.6 years ago by ★ 2.0k
0
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0
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1.7k
views
How to compute the "completeness" of a KEGG module using a set of KEGG orthologs? (Module Completion Ratio)
KEGG KEGGREST keggorthology Metagenomics
4.9 years ago jol.espinoz ▴ 40
2
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1
reply
1.4k
views
GSEA generate genesets
pathway KEGGREST GSEA
updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by • 0
0
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1
reply
2.9k
views
KEGGREST keggGet fails to retrieve modules, but not pathways
keggrest software error pathways modules kegg
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
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2
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1.3k
views
how can I find a pathway
kegg KEGGREST
6.2 years ago Bioinformatics ▴ 30
1
vote
8
replies
2.9k
views
KEGGREST mapping between genes and pathways
keggrest mapping genes to pathways
updated 7.0 years ago by 53k • written 7.0 years ago by ▴ 10
3
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4
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15k
views
How i can get a list of KEGG pathways and its list of genes?
keggrest
updated 7.6 years ago by 25k • written 7.7 years ago by ▴ 10
0
votes
1
reply
1.1k
views
KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
7.7 years ago doctor.dee005 • 0
1
vote
9
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4.2k
views
Gene-Metabolite and Metabolite-Pathway network from KEGG with KEGGREST
KEGG keggrest
updated 7.8 years ago by ▴ 10 • written 7.8 years ago by ▴ 20
1
vote
4
replies
3.0k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest chemminer fmcsr graph
written 7.9 years ago by • 0
2
votes
1
reply
1.4k
views
How can I remove the ellipsis and get the complete sequence and results?
keggrest biostrings
updated 8.0 years ago by 4.3k • written 8.0 years ago by ▴ 10
2
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1
reply
1.9k
views
Possible bug: outdated result from listDatabases()
KEGGREST bug
updated 8.5 years ago by ▴ 50 • written 8.5 years ago by • 0
0
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2
replies
4.3k
views
Accessing KEGG (errors w/ KEGGREST)
KEGG keggrest
updated 9.0 years ago by 53k • written 9.0 years ago by • 0
0
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2
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1.7k
views
Retrieve KEGG from protein GI
R KEGG KEGGREST
9.1 years ago felipelira3 • 0
0
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2
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4.2k
views
Get the reactions for a organism using KEGGREST
keggrest
9.7 years ago kjboteroo • 0
0
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11
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6.3k
views
Examples from keggList in KEGGREST don't all work
software error keggrest
9.9 years ago Bryan Hanson • 0
0
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1
reply
2.2k
views
Problem in KEGGREST package function keggConv
KEGGREST keggConv
updated 10.0 years ago by ★ 8.2k • written 10.0 years ago by ▴ 120
2
votes
15
replies
5.2k
views
Timeout error in kegga() using edgeR
edger kegga keggrest
10.1 years ago Likai Mao ▴ 40
1
vote
1
reply
2.1k
views
KEGGREST fail to fetch human genes link to pathway
keggrest clusterProfiler
updated 10.4 years ago by ★ 8.2k • written 10.5 years ago by ★ 1.2k
0
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2
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9.5k
views
Using Keggrest to convert ncbi gene IDs to kegg orthology and pathway
keggrest kegg keggorthology
updated 11.2 years ago by 68k • written 11.2 years ago by ▴ 100
0
votes
4
replies
3.5k
views
Error: could not find function "plotPCA"
GO affycoretools KEGGREST GO affycoretools KEGGREST
updated 11.7 years ago by 43k • written 11.7 years ago by ▴ 50
0
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1
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1.9k
views
limma2annaffy
GO GUI annaffy oligo oligoClasses KEGGREST GO GUI annaffy oligo oligoClasses KEGGREST
updated 12.1 years ago by 68k • written 12.1 years ago by ★ 13k
0
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1
reply
1.9k
views
Error message using arrayweights
GO Cancer mouse4302 KEGGREST GO Cancer mouse4302 KEGGREST
updated 12.1 years ago by ▴ 1000 • written 12.1 years ago by ▴ 80
0
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0
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2.0k
views
Pathview question
KEGGREST pathview KEGGREST pathview
12.4 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
2.4k
views
trouble reading DNA stringset from keggGet function
PROcess KEGGREST PROcess KEGGREST
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
0
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7
replies
5.7k
views
Simple pathway enrichment analysis for gene lists
Microarray Category gage KEGGREST ROntoTools Microarray Category gage KEGGREST ROntoTools
updated 12.4 years ago by ▴ 470 • written 12.4 years ago by ▴ 680
0
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0
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2.1k
views
SPIA algorithm organisms not included already in the SPIA package
Organism SPIA goseq KEGGREST Organism SPIA goseq KEGGREST
12.9 years ago Tarca, Adi ▴ 570
0
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0
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1.5k
views
KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
13.1 years ago Dan Tenenbaum ★ 8.2k
34 results • Page 1 of 1
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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
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Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
A: DESeq2 - VST eliminates zero values
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