Showing : Limma • reset
0
votes
1
reply
73
views
Combining two proteomics datasets with limpa
limpa ProteomicsWorkflow limma
updated 1 day ago by 53k • written 1 day ago by • 0
4
votes
2
replies
266
views
Limma-voom sample weights and impact on DEG numbers
limma
17 days ago • updated 4 days ago A.Barden ▴ 20
0
votes
4
replies
491
views
How does contrasts.fit do in limma to extract comparisons with a model having interaction terms?
limma
updated 3 days ago by • 0 • written 21 days ago by • 0
0
votes
1
reply
1.3k
views
two questions about limma
Microarray limma Microarray limma
updated 5 weeks ago by 53k • written 18.9 years ago by ▴ 240
2
votes
2
replies
300
views
Identifying differentially expressed genes in individual samples from a large cohort
limma DifferentialExpression
7 weeks ago jamie.gearing ▴ 60
1
vote
2
replies
382
views
Can limma be used with module eigengenes instead of genes?
limma WGCNA GSVA
written 5 months ago by ▴ 20
0
votes
1
reply
240
views
How to model DE for RNA-seq in concordant monozygotic twins?
RNASeq variancePartition RUVSeq limma edgeR
updated 3 months ago by 53k • written 3 months ago by • 0
5
votes
13
replies
1.4k
views
Guidance on limma for pseudobulk scRNA-seq with multi-factor design
limma RNASeq scRNAseq
updated 3 months ago by 53k • written 3 months ago by • 0
0
votes
4
replies
468
views
voomLmFit fitted log-CPM values
limma edgeR
updated 4 months ago by 53k • written 4 months ago by ▴ 10
1
vote
3
replies
395
views
ROAST compare results with complex design
limma mroast roast CAMERA
written 4 months ago by • 0
2
votes
8
replies
785
views
Are voomByGroup and voomLmFit compatible?
limma voomLmFit voomByGroup
updated 4 months ago by 53k • written 4 months ago by ▴ 30
3
votes
4
replies
587
views
p-adjusted values in multiple comparisons
StatisticalMethod limma RnaSeqSampleSizeData
updated 3 months ago by • 0 • written 4 months ago by • 0
1
vote
2
replies
413
views
Difference between logFC in limma-voom and weighted limma-voom
limma voom weighting
5 months ago richardallenfriedmanbrooklyn ▴ 30
3
votes
1
reply
424
views
Limpa Pipeline Order
limma limpa
updated 5 months ago by 53k • written 5 months ago by • 0
3
votes
2
replies
483
views
Should voomWithQualityWeights still be used when the sample-specific weights vary between the groups of interest?
limma
updated 5 months ago by 53k • written 5 months ago by ▴ 20
0
votes
8
replies
682
views
How to use limma to analyze complex temporal RNAseq data
timecourse RNASeq limma
5 months ago Jiahao Tian • 0
2
votes
2
replies
450
views
Limma : paired samples leading to unexpected estimates
limma
5 months ago Basti ▴ 780
2
votes
2
replies
555
views
(Why) do limma's confidence intervals depend on topTable's p.value argument?
limma
5 months ago sandmann.t ▴ 70
4
votes
8
replies
2.0k
views
Should Xenium pseudobulk experiments be analysed like microarrays (limma) or like RNASeq (edgeR,Deseq2, or limma-voom)
Deseq2 edgeR limma xenium Voom
5 months ago richardallenfriedmanbrooklyn ▴ 30
7
votes
9
replies
5.8k
views
competitive enrichment test yields too few significant results, self-contained too many
limma DESeq2 fry edgeR
6 months ago • updated 5 months ago bbao ▴ 10
0
votes
1
reply
1.4k
views
How to avoid losing a sample as reference running an individual differential expression analysis (LIMMA)
Microarray limma BRAIN Microarray limma BRAIN
updated 6 months ago by 53k • written 16.9 years ago by ▴ 10
0
votes
3
replies
2.4k
views
Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-derived metabolic measures and various traits
limma Bioconductor Metabolomics
updated 6 months ago by 53k • written 6 months ago by • 0
0
votes
4
replies
1.8k
views
How to use goana function with zebrafish genome from org.Dr.eg.db
org.Dr.eg.db zebrafish limma
6 months ago Eric • 0
3
votes
2
replies
6.4k
views
limma duplicateCorrelation appropriate where some blocks cross condition and some are in same condition?
limma
7 months ago Geoff • 0
2
votes
3
replies
1.6k
views
Differential gene expression analysis on haplotype-resolved diploid assembly
edgeR DESeq2 haplotype limma
7 months ago Paulito • 0
0
votes
1
reply
505
views
Typo in the help of lmFit()
limma
updated 7 months ago by 53k • written 7 months ago by • 0
0
votes
2
replies
699
views
Limma suqeezeVar
limma
7 months ago Mengchun • 0
0
votes
2
replies
1.4k
views
Limma trend with limpa
limpa limma trend
updated 7 months ago by 53k • written 7 months ago by • 0
2
votes
5
replies
1.3k
views
Dealing with heteroscedascity in limma
limma splines Proteomics
written 8 months ago by • 0
5
votes
7
replies
3.4k
views
limma correction for tumor purity
limma
8 months ago gabriella.jacobson-eisenberg ▴ 20
0
votes
3
replies
1.1k
views
Model performance for spline modelling of RNA-seq timecourses in edgeR
edgeR limma
written 9 months ago by ▴ 10
4
votes
7
replies
3.4k
views
Check removeBatchEffect effectiveness
RNAseq limma removeBatchEffect
8 months ago • updated 3 months ago massimo ▴ 10
0
votes
0
replies
489
views
Significant Probes and Genes differ in Probe and Region level Differential Methylation Analyses
limma probe DMRcate GenomicRanges DifferentialMethylation
8 months ago jamiecatalano2 • 0
2
votes
1
reply
744
views
ROAST for small sets
limma mroast
updated 8 months ago by 53k • written 8 months ago by • 0
2
votes
4
replies
2.0k
views
how to use `arrayWeightsQuick()`?
limma
updated 8 months ago by • 0 • written 9 months ago by • 0
2
votes
2
replies
1.6k
views
Improving performance of edgeR and limma while adjusting for multiple confounders
edgeR limma
updated 9 months ago by ★ 5.0k • written 9 months ago by • 0
2
votes
4
replies
1.0k
views
Explanation for ROAST results
CAMERA limma
written 9 months ago by • 0
5
votes
3
replies
1.3k
views
Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with multiple cell types
edgeR limma voomLmFit
updated 9 months ago by 53k • written 9 months ago by ▴ 10
2
votes
2
replies
1.7k
views
Limma - Complex 2-way multi-level contrast with paired samples
edgeR contrastmatrix limma
10 months ago • updated 9 months ago Elizabeth • 0
1
vote
2
replies
1.1k
views
Differential expression of proteins using somascan data
somascan limma
written 10 months ago by • 0
2
votes
4
replies
1.6k
views
Use of limma R package with targeted proteomics for DE analysis
DEanalysis limma olinktargetedproteomics
10 months ago svlachavas ▴ 840
3
votes
5
replies
2.2k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 11 months ago by 68k • written 11 months ago by ▴ 10
0
votes
0
replies
403
views
Testing Differential Expression with Interaction Effect Between Categorical and Continuous Variable with Repeated (Paired) Measures using variancePar…
limma variancePartition
12 months ago GJ • 0
0
votes
2
replies
703
views
Paired analysis in proteomics data for DE while interested in only a particular subset of the data
limma modelmatrix pairedanalysis Proteomics
written 12 months ago by ▴ 840
2
votes
5
replies
909
views
Differential variability modelling with vst() expression
limma DESeq2
written 12 months ago by • 0
6
votes
5
replies
1.1k
views
How do I fix an odd voom plot in a combined dataset?
limma Normalization voom
updated 12 months ago by 68k • written 12 months ago by • 0
0
votes
2
replies
841
views
Cross-validation with multiple control subgroups in limma
limma multtest
12 months ago Ali Barry ▴ 40
1
vote
9
replies
1.6k
views
Normalizing batch effects using technical replicates for DGE analysis between two conditions from 2 different runs
limma DESeq2 edgeR
written 12 months ago by ▴ 40
0
votes
2
replies
764
views
Advice needed: Using limma for differential pathway analysis with continuous disease progression scores
limma DifferentialExpression Designmatrix
13 months ago Tadeoye ▴ 20
0
votes
2
replies
977
views
sva: get a sv for RIN scores
limma sva variancePartition voom RNASeq
updated 13 months ago by 53k • written 13 months ago by ▴ 10
4,229 results • Page 1 of 85
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes by waveappeal • 0
@[Geometry][1] Snapchat truly remains a popular app that fosters connection among people. Follow and stay updated to build and develop a su…
Comment: Guitar R package requires update due to dependency GenomicFeatures by crystalswing • 0
@[Slope Free][1] I'm impressed with your referrals for effectively fixing these issues. I'll be following up and potentially gathering more…
Comment: Problem with the TMB plot by 928380504 • 0
Itcapybara clicker is Slice Masternot o1v1 lolnlplanet clicker y level-devileasy to read bu Build Now GG|||| also make the conten more rich…
Comment: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by 928380504 • 0
[https://play-slice-master.com/][1][https://1v1-lol.cc/][2][https://planet-clicker.co/][3][https://play-level-devil.com/][4][https://buildn…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Votes
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Aleena_Ensembl ▴ 30
Popular Question to Hervé Pagès 16k
Teacher to Michael Love 43k
Popular Question to lianov • 0
Locations • All
The city by the bay, 3 minutes ago
United States, 8 minutes ago
Barcelona, Spain, 8 minutes ago
USA, 19 minutes ago
United States, 27 minutes ago
Traffic: 1637 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6