Bioconductor Mouse

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358

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annotation SingleR mouse SingleCellData scRNAseq

8 months ago Muhammad • 0

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951

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TFutils mouse gene convert

4.4 years ago nicocillari • 0

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2.2k

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RNAseq Affymetrix Mouse

updated 5.0 years ago by Guido Hooiveld ★ 4.1k • written 5.0 years ago by olrema • 0

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AnnotationHub Ensembl Mouse AnnotationHub Ensembl

5.9 years ago dmgatti ▴ 10

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1.6k

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deseq2 mouse rnaseq

7.9 years ago Emilie • 0

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2.3k

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Annotation mouse UNIPROT

updated 8.1 years ago by Mike Smith ★ 6.6k • written 8.1 years ago by julie.chevalier • 0

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9.0k

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human mouse ensembl annotationdbi homologue

8.4 years ago Keith Hughitt ▴ 180

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1.7k

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bead chip Annotation Mouse Lumi probeID2nuID

updated 9.3 years ago by Andy Lynch ▴ 120 • written 9.3 years ago by smt8n • 0

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1.4k

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biomart ensembl release82 variation mouse News

10.1 years ago Thomas Maurel ▴ 800

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3.4k

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human mouse GRCh38 biomart Ensembl News

updated 10.3 years ago by Sonali Arora ▴ 390 • written 10.3 years ago by Thomas Maurel ▴ 800

10 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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