Bioconductor Mouse

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108

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annotation SingleR mouse SingleCellData scRNAseq

5 weeks ago Muhammad • 0

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813

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TFutils mouse gene convert

3.8 years ago nicocillari • 0

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1.9k

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RNAseq Affymetrix Mouse

updated 4.4 years ago by Guido Hooiveld ★ 4.1k • written 4.4 years ago by olrema • 0

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AnnotationHub Ensembl Mouse AnnotationHub Ensembl

5.3 years ago dmgatti ▴ 10

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1.4k

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deseq2 mouse rnaseq

7.3 years ago Emilie • 0

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2.1k

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Annotation mouse UNIPROT

updated 7.5 years ago by Mike Smith ★ 6.6k • written 7.5 years ago by julie.chevalier • 0

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human mouse ensembl annotationdbi homologue

7.8 years ago Keith Hughitt ▴ 180

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1.5k

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bead chip Annotation Mouse Lumi probeID2nuID

updated 8.7 years ago by Andy Lynch ▴ 120 • written 8.7 years ago by smt8n • 0

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biomart ensembl release82 variation mouse News

9.5 years ago Thomas Maurel ▴ 800

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human mouse GRCh38 biomart Ensembl News

updated 9.7 years ago by Sonali Arora ▴ 390 • written 9.7 years ago by Thomas Maurel ▴ 800

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Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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