Bioconductor Mouse

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305

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annotation SingleR mouse SingleCellData scRNAseq

7 months ago Muhammad • 0

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931

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TFutils mouse gene convert

4.4 years ago nicocillari • 0

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2.1k

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RNAseq Affymetrix Mouse

updated 5.0 years ago by Guido Hooiveld ★ 4.1k • written 5.0 years ago by olrema • 0

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AnnotationHub Ensembl Mouse AnnotationHub Ensembl

5.8 years ago dmgatti ▴ 10

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1.5k

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deseq2 mouse rnaseq

7.9 years ago • updated 7.8 years ago Emilie • 0

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2.3k

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Annotation mouse UNIPROT

updated 8.1 years ago by Mike Smith ★ 6.6k • written 8.1 years ago by julie.chevalier • 0

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human mouse ensembl annotationdbi homologue

8.3 years ago Keith Hughitt ▴ 180

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1.6k

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bead chip Annotation Mouse Lumi probeID2nuID

updated 9.2 years ago by Andy Lynch ▴ 120 • written 9.2 years ago by smt8n • 0

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1.4k

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biomart ensembl release82 variation mouse News

10.0 years ago Thomas Maurel ▴ 800

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3.3k

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human mouse GRCh38 biomart Ensembl News

updated 10.2 years ago by Sonali Arora ▴ 390 • written 10.2 years ago by Thomas Maurel ▴ 800

10 results • Page 1 of 1

Recent ...

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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