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Mouse
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Help with mouse cell type annotation
annotation
SingleR
mouse
SingleCellData
scRNAseq
2 days ago
Muhammad
• 0
0
votes
0
replies
790
views
TFutils database
TFutils
mouse
gene
convert
3.7 years ago
nicocillari
• 0
3
votes
4
replies
1.9k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq
Affymetrix
Mouse
updated 4.3 years ago by
Guido Hooiveld
★ 4.1k • written 4.3 years ago by
olrema
• 0
1
vote
3
replies
2.7k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
5.2 years ago
dmgatti
▴ 10
0
votes
3
replies
1.4k
views
Choosing DESeq2 design for mice experiment
deseq2
mouse
rnaseq
7.2 years ago
Emilie
• 0
0
votes
1
reply
2.0k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 7.4 years ago by
Mike Smith
★ 6.6k • written 7.4 years ago by
julie.chevalier
• 0
6
votes
1
reply
7.4k
views
Finding orthologous human/mouse ENSEMBL IDs
human
mouse
ensembl
annotationdbi
homologue
7.7 years ago
Keith Hughitt
▴ 180
0
votes
1
reply
1.5k
views
Annotation for Mouse Illumina Expression Chip V6.1.1
bead chip
Annotation
Mouse
Lumi
probeID2nuID
updated 8.6 years ago by
Andy Lynch
▴ 120 • written 8.6 years ago by
smt8n
• 0
0
votes
0
replies
1.3k
views
News:
Ensembl release 82 is out!
biomart
ensembl
release82
variation
mouse
News
9.4 years ago
Thomas Maurel
▴ 800
5
votes
2
replies
3.1k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 9.6 years ago by
Sonali Arora
▴ 390 • written 9.6 years ago by
Thomas Maurel
▴ 800
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Hello! If you're looking for online casinos where you can start playing with a small deposit, I recently found a great resource. Check out …
Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
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Wolfgang Huber
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