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Mouse
•
reset
0
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409
views
Help with mouse cell type annotation
annotation
SingleR
mouse
SingleCellData
scRNAseq
9 months ago
Muhammad
• 0
0
votes
0
replies
976
views
TFutils database
TFutils
mouse
gene
convert
4.5 years ago
nicocillari
• 0
3
votes
4
replies
2.2k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq
Affymetrix
Mouse
updated 5.1 years ago by
Guido Hooiveld
★ 4.1k • written 5.1 years ago by
olrema
• 0
1
vote
3
replies
3.1k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
6.0 years ago
dmgatti
▴ 10
0
votes
3
replies
1.7k
views
Choosing DESeq2 design for mice experiment
deseq2
mouse
rnaseq
8.0 years ago
Emilie
• 0
0
votes
1
reply
2.3k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 8.2 years ago by
Mike Smith
★ 6.6k • written 8.2 years ago by
julie.chevalier
• 0
6
votes
1
reply
9.3k
views
Finding orthologous human/mouse ENSEMBL IDs
human
mouse
ensembl
annotationdbi
homologue
8.5 years ago
Keith Hughitt
▴ 180
0
votes
1
reply
1.7k
views
Annotation for Mouse Illumina Expression Chip V6.1.1
bead chip
Annotation
Mouse
Lumi
probeID2nuID
updated 9.4 years ago by
Andy Lynch
▴ 120 • written 9.4 years ago by
smt8n
• 0
0
votes
0
replies
1.5k
views
News:
Ensembl release 82 is out!
biomart
ensembl
release82
variation
mouse
News
10.2 years ago
Thomas Maurel
▴ 800
5
votes
2
replies
3.5k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 10.4 years ago by
Sonali Arora
▴ 390 • written 10.4 years ago by
Thomas Maurel
▴ 800
10 results • Page
1 of 1
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Hervé Pagès
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▴ 30
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James W. MacDonald
68k
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shepherl
4.2k
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