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Mouse
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0
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358
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Help with mouse cell type annotation
annotation
SingleR
mouse
SingleCellData
scRNAseq
8 months ago
Muhammad
• 0
0
votes
0
replies
951
views
TFutils database
TFutils
mouse
gene
convert
4.4 years ago
nicocillari
• 0
3
votes
4
replies
2.2k
views
AnnotationData package for Affymetrix HT MG-430 PM Array Plate
RNAseq
Affymetrix
Mouse
updated 5.0 years ago by
Guido Hooiveld
★ 4.1k • written 5.0 years ago by
olrema
• 0
1
vote
3
replies
3.0k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub
Ensembl
Mouse
AnnotationHub Ensembl
5.9 years ago
dmgatti
▴ 10
0
votes
3
replies
1.6k
views
Choosing DESeq2 design for mice experiment
deseq2
mouse
rnaseq
7.9 years ago
Emilie
• 0
0
votes
1
reply
2.3k
views
org.Mm.eg.db UNIPROT missing values
Annotation
mouse
UNIPROT
updated 8.1 years ago by
Mike Smith
★ 6.6k • written 8.1 years ago by
julie.chevalier
• 0
6
votes
1
reply
9.0k
views
Finding orthologous human/mouse ENSEMBL IDs
human
mouse
ensembl
annotationdbi
homologue
8.4 years ago
Keith Hughitt
▴ 180
0
votes
1
reply
1.7k
views
Annotation for Mouse Illumina Expression Chip V6.1.1
bead chip
Annotation
Mouse
Lumi
probeID2nuID
updated 9.3 years ago by
Andy Lynch
▴ 120 • written 9.3 years ago by
smt8n
• 0
0
votes
0
replies
1.4k
views
News:
Ensembl release 82 is out!
biomart
ensembl
release82
variation
mouse
News
10.1 years ago
Thomas Maurel
▴ 800
5
votes
2
replies
3.4k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 10.3 years ago by
Sonali Arora
▴ 390 • written 10.3 years ago by
Thomas Maurel
▴ 800
10 results • Page
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Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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