Bioconductor NCBI

Showing : NCBI • reset

votes

replies

1.1k

views

Rstudio cDNA ensembldb NCBI

22 months ago R_Page • 0

votes

replies

3.3k

views

RStudio convert ensembldb NCBI

updated 12 months ago by MauriAndres • 0 • written 23 months ago by j_denton • 0

votes

replies

947

views

getGFF NCBI biomartr biomaRt

4.2 years ago Matan G. ▴ 60

votes

replies

1.5k

views

MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 5.4 years ago by James W. MacDonald 68k • written 5.4 years ago by chefer • 0

vote

replies

2.0k

views

ontology edger limma ncbi organism package

updated 5.6 years ago by Gordon Smyth 53k • written 5.6 years ago by babak.loghmani ▴ 20

votes

replies

2.7k

views

rsubread ncbi GRCh38 hg38

updated 9.0 years ago by Wei Shi ★ 3.6k • written 9.0 years ago by jan.soderman • 0

votes

replies

1.8k

views

ncbi sra search

9.7 years ago massacomgrao • 0

votes

replies

4.5k

views

ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by gokcen.eraslan ▴ 10

votes

replies

3.9k

views

microarray normalization ncbi

updated 10.4 years ago by James W. MacDonald 68k • written 10.4 years ago by pankajnarula84 ▴ 20

votes

1.6k

views

annotate ncbi url

10.8 years ago reuma • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

Awards • All