Bioconductor NCBI

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Rstudio cDNA ensembldb NCBI

21 months ago R_Page • 0

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3.2k

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RStudio convert ensembldb NCBI

updated 11 months ago by MauriAndres • 0 • written 22 months ago by j_denton • 0

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923

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getGFF NCBI biomartr biomaRt

4.0 years ago Matan G. ▴ 60

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1.5k

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 5.3 years ago by James W. MacDonald 68k • written 5.3 years ago by chefer • 0

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1.9k

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ontology edger limma ncbi organism package

updated 5.5 years ago by Gordon Smyth 52k • written 5.5 years ago by babak.loghmani ▴ 20

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2.7k

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rsubread ncbi GRCh38 hg38

updated 8.8 years ago by Wei Shi ★ 3.6k • written 8.8 years ago by jan.soderman • 0

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1.7k

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ncbi sra search

9.6 years ago massacomgrao • 0

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ncbi refseq maketxdbfromgff fetchExtendedChromInfoFromUCSC genomeinfodb

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by gokcen.eraslan ▴ 10

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3.9k

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microarray normalization ncbi

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by pankajnarula84 ▴ 20

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1.5k

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annotate ncbi url

10.7 years ago reuma • 0

10 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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Popular Question to Robert Castelo ★ 3.4k