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NCBI
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reset
2
votes
3
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820
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NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio
cDNA
ensembldb
NCBI
14 months ago
R_Page
• 0
4
votes
6
replies
2.2k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio
convert
ensembldb
NCBI
updated 4 months ago by
MauriAndres
• 0 • written 15 months ago by
j_denton
• 0
0
votes
0
replies
845
views
getGFFSet function CRASHES R session
getGFF
NCBI
biomartr
biomaRt
3.5 years ago
Matan G.
▴ 60
2
votes
4
replies
1.3k
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI
NCBI
SQL
AnnotationForge
updated 4.8 years ago by
James W. MacDonald
68k • written 4.8 years ago by
chefer
• 0
1
vote
5
replies
1.7k
views
Gene Ontology analysis
ontology
edger
limma
ncbi
organism package
updated 4.9 years ago by
Gordon Smyth
52k • written 4.9 years ago by
babak.loghmani
▴ 20
0
votes
4
replies
2.6k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread
ncbi
GRCh38
hg38
updated 8.3 years ago by
Wei Shi
★ 3.6k • written 8.3 years ago by
jan.soderman
• 0
0
votes
0
replies
1.6k
views
Search SRA based on BioSample Attributes
ncbi
sra
search
9.1 years ago
massacomgrao
• 0
8
votes
7
replies
4.1k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 9.1 years ago by
Hervé Pagès
16k • written 9.1 years ago by
gokcen.eraslan
▴ 10
2
votes
2
replies
3.7k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray
normalization
ncbi
updated 9.8 years ago by
James W. MacDonald
68k • written 9.8 years ago by
pankajnarula84
▴ 20
0
votes
1
reply
1.4k
views
.getNcbiURL returns old NCBI url ?
annotate
ncbi
url
10.1 years ago
reuma
• 0
10 results • Page
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Answer: Suggesting changing the "reply-to" field to the mailing list address.
by
kierabryantuk
• 0
buttons embedded in each post to comment, to ask for clarifications, to request more details, or respond to a previous answer or comment. T…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
by
James W. MacDonald
68k
Any query over the internet can vary in the time to completion due to the vagaries of the connection you may have. I just tried your query …
Answer: batch effect removal for agilent microarray data
by
James W. MacDonald
68k
If all of the samples in group 155 are one type, and all the other samples in 438 are the other, then no. The biological and technical vari…
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Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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