Bioconductor NanoStringDiff

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nanostringdiff nanostring NanoStringDiff

updated 5.9 years ago by James W. MacDonald 65k • written 5.9 years ago by casey.rimland ▴ 150

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1.9k

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NanoStringDiff NanoString nCounter DE analysis

updated 6 months ago by georgersmith • 0 • written 4.7 years ago by lim6432 ▴ 50

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1.5k

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limma edgeR DESeq2 NanoStringDiff

updated 2.6 years ago by James W. MacDonald 65k • written 2.7 years ago by reberya • 0

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1.4k

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NanoStringDiff

updated 3 months ago by pjanas • 0 • written 5.0 years ago by noelleenright ▴ 10

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1.3k

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nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

6.8 years ago c.kohler • 0

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1.1k

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NanoStringDiff

4.3 years ago stephen.pollo • 0

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975

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Nan NanoStringDiff

2.8 years ago choijamts • 0

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903

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Bioconductor Transcriptomics NanoStringDiff

updated 3.5 years ago by Laurent Gatto 1.6k • written 3.5 years ago by Pedro ▴ 10

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873

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NanoStringDiff GLM Gene expression

updated 4.7 years ago by James W. MacDonald 65k • written 4.7 years ago by Guillaume Robert • 0

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852

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DESeq2 NanoStringDiff limma

11 months ago pg45863 ▴ 10

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831

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NanoStringDiff clusterProfiler fgsea

11 months ago pg45863 ▴ 10

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661

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NanoStringDiff

3.1 years ago YM • 0

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631

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GEOquery MicroarrayData Normalization Microarray NanoStringDiff

updated 15 months ago by James W. MacDonald 65k • written 15 months ago by Aleksandra • 0

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551

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DifferentialExpression NanoStringDiff

2.4 years ago sanrie10 • 0

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512

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NanoStringDiff

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by Paraskevi • 0

15 results • Page 1 of 1

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Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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