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Comment: Extremely small p-values using Limma for proteomic data
by
Abbey
•
0
This is the code. The only part I changed was adding the contrasts.fit as you suggested. Thanks for taking a look!
```
# Load necessary …
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
Probably. I would not expect such large fold changes. But without seeing your code, who knows?
Comment: Extremely small p-values using Limma for proteomic data
by
Abbey
•
0
Thank you James! This worked to fix the p-values. However, the plot still looks one-sided... any idea what's going on with the left side?…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
•
0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma
by
Shaimaa Gamal
•
0
I have performed RUVg correction and extracted W, factors of unwanted variation.
According to limma guide,
> In the limma approach
to RNA…
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