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PCATools
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How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
4 days ago • updated 1 day ago
BioinfGuru
▴ 30
0
votes
2
replies
226
views
PCA plot suggestions
DESeq2
PCAtools
updated 21 days ago by
Michael Love
42k • written 22 days ago by
Aaliya
• 0
0
votes
8
replies
383
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 22 days ago by
swbarnes2
★ 1.4k • written 24 days ago by
Aaliya
• 0
3
votes
5
replies
412
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
updated 6 weeks ago by
Gordon Smyth
50k • written 7 weeks ago by
Fabian
• 0
4
votes
8
replies
3.7k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 13 months ago by
CP
• 0 • written 3.0 years ago by
elizabethe819
• 0
1
vote
3
replies
1.2k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 16 months ago by
Kevin Blighe
★ 3.9k • written 16 months ago by
M Tuhin
• 0
1
vote
1
reply
982
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 18 months ago by
Kevin Blighe
★ 3.9k • written 18 months ago by
ilaria.debenedictis
• 0
0
votes
1
reply
876
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
pterry
• 0
0
votes
3
replies
1.2k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 23 months ago by
Federico Marini
▴ 150 • written 23 months ago by
m610110001
• 0
5
votes
6
replies
2.5k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.1 years ago
Alan
• 0
2
votes
4
replies
1.6k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 2.4 years ago by
Miguel
▴ 20 • written 3.7 years ago by
k.vitting.seerup
▴ 120
3
votes
2
replies
857
views
PCAtools lables missing or out of the plot
PCAtools
3.1 years ago
luca.s
▴ 50
3
votes
3
replies
2.7k
views
PCAtools - change colour of points
PCAtools
updated 3.3 years ago by
Kevin Blighe
★ 3.9k • written 3.3 years ago by
Terra
• 0
3
votes
15
replies
3.2k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 3.4 years ago by
Kevin Blighe
★ 3.9k • written 3.4 years ago by
mschmidt
▴ 10
0
votes
1
reply
1.8k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
ecg1g15
▴ 20
1
vote
3
replies
1.4k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
oakhamwolf
• 0
16 results • Page
1 of 1
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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