Showing : PCAtools • reset
3
votes
15
replies
3.2k
views
How to ellipse a subset of data PCA biplot?
biplot PCA RNASeq PCAtools
updated 3.4 years ago by ★ 3.9k • written 3.4 years ago by ▴ 10
4
votes
8
replies
3.6k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse RNAseq PCAtools
updated 13 months ago by • 0 • written 3.0 years ago by • 0
0
votes
8
replies
361
views
DESeq2 output used for PCA plot on R studio
DESeq2 RSTUDIO PCAtools
updated 15 days ago by ★ 1.4k • written 17 days ago by • 0
5
votes
6
replies
2.5k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools edgeR pcaExplorer RNASeq RNAseq123
2.1 years ago Alan • 0
3
votes
5
replies
396
views
Differing results from plotMDS and PCAtools
edgeR PCAtools
updated 5 weeks ago by 50k • written 6 weeks ago by • 0
2
votes
4
replies
1.6k
views
Comparing discrete variable to PCA
EDA pcaExplorer PCAtools PCA
updated 2.4 years ago by ▴ 10 • written 3.7 years ago by ▴ 120
1
vote
3
replies
1.2k
views
Adding ellipse in PCAtools biplot
Biplot FactoMineR proteomics PCAtools ellipse
updated 15 months ago by ★ 3.9k • written 15 months ago by • 0
0
votes
3
replies
1.2k
views
I got error when visualizing my PCA
PCAtools pcaExplorer pcaMethods
updated 22 months ago by ▴ 150 • written 22 months ago by • 0
3
votes
3
replies
2.6k
views
PCAtools - change colour of points
PCAtools
updated 3.3 years ago by ★ 3.9k • written 3.3 years ago by • 0
1
vote
3
replies
1.4k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 3.6 years ago by ★ 3.9k • written 3.6 years ago by • 0
0
votes
2
replies
216
views
PCA plot suggestions
DESeq2 PCAtools
updated 14 days ago by 42k • written 15 days ago by • 0
3
votes
2
replies
847
views
PCAtools lables missing or out of the plot
PCAtools
3.1 years ago luca.s ▴ 50
0
votes
1
reply
1.8k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools biplot DESeq2 RNASeq PCA
updated 3.5 years ago by ★ 3.9k • written 3.5 years ago by ▴ 20
0
votes
1
reply
869
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools bioconductor
updated 21 months ago by 65k • written 21 months ago by • 0
1
vote
1
reply
966
views
PCA input data from DRAGEN RNA pipeline
illumina PCAtools PCA
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
15 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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