Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Parallel
•
reset
6
votes
12
replies
1.9k
views
mclapply to loop over a GRangesList object
GenomicRanges
GRanges
GRangesList
parallel
mclapply
5.2 years ago
foehn
▴ 100
2
votes
10
replies
2.1k
views
Correct way to load a package inside bplapply function
parallel
biocparallel
6.7 years ago
felix.ernst
• 0
0
votes
9
replies
2.2k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
rna seq
▴ 90
1
vote
6
replies
1.6k
views
Multithreading problems with qalign
quasr
parallel
updated 7.4 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 7.4 years ago by
kirt.onthank
• 0
1
vote
5
replies
2.4k
views
DiffBind does not run in parallel
diffbind
parallel
biocparallel
updated 6.3 years ago by
Rory Stark
★ 5.2k • written 6.3 years ago by
eggrandio
• 0
0
votes
4
replies
1.4k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.4 years ago
ben.ward
▴ 30
2
votes
4
replies
1.4k
views
Running HTSFilter in paralell
htsfilter
parallel
updated 8.3 years ago by
andrea.rau
▴ 80 • written 8.3 years ago by
Richard Yanicky
▴ 10
3
votes
4
replies
1.4k
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel
R
DiffBind
updated 2.4 years ago by
Rory Stark
★ 5.2k • written 2.7 years ago by
eggrandio
• 0
0
votes
4
replies
1.6k
views
DESeq2 using many cores despite parallel = FALSE
deseq2
parallel
updated 4.6 years ago by
Michael Love
41k • written 4.6 years ago by
symbiologist
• 0
7
votes
4
replies
1.7k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
gabriel.hoffman
▴ 110
2
votes
3
replies
2.7k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel
parallel
6.9 years ago
davide risso
▴ 950
0
votes
3
replies
1.7k
views
DEXSeqHTML parallelization error
Parallel
DEXSeq
DEXSeqHTML
8.4 years ago
Neel Aluru
▴ 460
3
votes
3
replies
1.6k
views
BiocParallel: zombie processes on FORK cluster
biocparallel
parallel
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
alserg
▴ 260
1
vote
1
reply
1.5k
views
sva: Parallel execution of sva()-function fails.
sva
parallel
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
maltethodberg
▴ 180
0
votes
1
reply
966
views
Running limma in parallel
parallel
R
limma
EWAS
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
Lorenzo
• 0
1
vote
1
reply
1.0k
views
trigger package fails at parallalization - Transcriptional Regulatory Inference from Genetics of ExpRession
trigger
parallel
processing
multicore
updated 9.5 years ago by
Valerie Obenchain
★ 6.8k • written 9.5 years ago by
affennacken
• 0
4
votes
1
reply
1.3k
views
Parallel Join Excessively Slow
biocparallel
curatedmetagenomicdata
parallel
dplyr
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
Lucas Schiffer
▴ 240
0
votes
1
reply
1.2k
views
BiocParallel and variable scope in child processes
parallel
variable scope
fork
BiocParallel
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
dan.gatti
• 0
0
votes
1
reply
982
views
DiffBind count warning
diffbind
parallel
updated 6.2 years ago by
Rory Stark
★ 5.2k • written 6.2 years ago by
ghosos
• 0
0
votes
1
reply
1.2k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
8.2 years ago
rna seq
▴ 90
0
votes
1
reply
1.2k
views
Paralelization of maSigPro
maSigPro
parallel
8.6 years ago
gmdc
• 0
0
votes
1
reply
536
views
Using multiple cores SCTensor package
SCTensor
Single Cell RNA Seq
Parallel
4.5 years ago
ieuangw
• 0
0
votes
1
reply
1.3k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
9.2 years ago
Martin Morgan
25k
1
vote
1
reply
1.4k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 3.3 years ago by
Rory Stark
★ 5.2k • written 3.3 years ago by
Victor
• 0
1
vote
0
replies
1.4k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
6.4 years ago
s.munster
▴ 40
0
votes
0
replies
607
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel
seed
22 months ago
ZheFrench
▴ 50
0
votes
0
replies
1.2k
views
miR2Pathway Finite Observations
pathway analysis
mirna
parallel
6.1 years ago
genomic8328
▴ 10
27 results • Page
1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
• 0
Popular Question
to
Theo
▴ 10
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Locations
• All
India,
9 minutes ago
France,
10 minutes ago
WEHI, Melbourne, Australia,
21 minutes ago
United States,
43 minutes ago
France,
45 minutes ago
Traffic: 580 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6