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Pathway
•
reset
2
votes
11
replies
4.5k
views
Recent build and parsing error in pathview
pathview
KEGGgraph
gage
pathway
pathway analysis
6.8 years ago
Luo Weijun
★ 1.6k
2
votes
2
replies
1.4k
views
paxtoolsr how to extract Modificationfeature related to a node
pathway
paxtools
9.5 years ago
Guido Leoni
▴ 200
5
votes
6
replies
1.5k
views
DESeq2 w. pathway/network info as a prior knowledge
deseq2
pathway
ihw
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
guidobarzaghi
▴ 20
0
votes
2
replies
730
views
Adjusting DESeq2 p-values through IHW using pathway information as covariate
IHW
deseq2
Pathway
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
guidobarzaghi
▴ 20
2
votes
3
replies
1.0k
views
Accounting for Gene Set Overlaps in Goana and Kegga Results
limma
pathway
updated 4.7 years ago by
mikhael.manurung
▴ 270 • written 4.7 years ago by
Dario Strbenac
★ 1.5k
4
votes
4
replies
1.7k
views
How I interpret this plot from pathview
pathview
kegg
r
pathway
4.5 years ago • updated 4.4 years ago
AZ
▴ 30
3
votes
3
replies
4.6k
views
Genelist input for ClusterProfiler
R
ClusterProfiler
Enrichment
Pathway
updated 10 months ago by
Guido Hooiveld
★ 3.9k • written 4.0 years ago by
t.b.kuipers
• 0
0
votes
3
replies
1.1k
views
extracting the genes associated with a specific pathway
pathway
KEGG
annotation
annotationhub
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
Bogdan
▴ 670
2
votes
1
reply
972
views
GSEA generate genesets
pathway
KEGGREST
GSEA
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
MOHAMMAD
• 0
1
vote
3
replies
631
views
Can CAMERA analyze just one particular pathway
pathway
ORA
limma
CAMERA
DGE
updated 8 months ago by
Gordon Smyth
50k • written 8 months ago by
manuelsokolov
• 0
0
votes
1
reply
900
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
genomic8328
▴ 10
0
votes
1
reply
915
views
News:
SBGNview manuscript on bioRxiv now
pathway
SBGNview
Reactome
pathview
PANTHER
written 3.1 years ago by
Luo Weijun
★ 1.6k
0
votes
0
replies
775
views
Help with mapping Kegg hsa01100 using pathview
kegg
pathway
pathview
5.1 years ago
Ahdee
▴ 50
13 results • Page
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Recent ...
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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