Bioconductor Pathway

Showing : Pathway • reset

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671

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pathway ORA limma CAMERA DGE

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by manuelsokolov • 0

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946

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pathway SBGNview Reactome pathview PANTHER

written 3.1 years ago by Luo Weijun ★ 1.6k

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990

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pathway KEGGREST GSEA

updated 3.2 years ago by Kevin Blighe ★ 3.9k • written 3.2 years ago by MOHAMMAD • 0

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1.1k

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pathway KEGG annotation annotationhub

updated 4.0 years ago by James W. MacDonald 66k • written 4.0 years ago by Bogdan ▴ 670

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4.8k

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R ClusterProfiler Enrichment Pathway

updated 11 months ago by Guido Hooiveld ★ 4.0k • written 4.1 years ago by t.b.kuipers • 0

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1.8k

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pathview kegg r pathway

4.5 years ago AZ ▴ 30

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1.1k

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limma pathway

updated 4.8 years ago by mikhael.manurung ▴ 270 • written 4.8 years ago by Dario Strbenac ★ 1.5k

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789

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kegg pathway pathview

5.2 years ago Ahdee ▴ 50

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745

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IHW deseq2 Pathway

updated 5.2 years ago by Michael Love 42k • written 5.2 years ago by guidobarzaghi ▴ 20

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1.5k

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deseq2 pathway ihw

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by guidobarzaghi ▴ 20

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919

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igraph miR2Pathway Pathway page_rank

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by genomic8328 ▴ 10

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4.6k

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pathview KEGGgraph gage pathway pathway analysis

6.8 years ago Luo Weijun ★ 1.6k

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1.5k

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pathway paxtools

9.6 years ago Guido Leoni ▴ 200

13 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Thank you so much!

Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k

Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…

Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10

Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …

Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Comment: ChAMP installation issue by shepherl 3.9k

We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…

Votes

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data

Comment: Ensembl plants at annotationHub?

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Awards • All

Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10