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Pathway
•
reset
2
votes
11
replies
4.5k
views
Recent build and parsing error in pathview
pathview
KEGGgraph
gage
pathway
pathway analysis
6.8 years ago
Luo Weijun
★ 1.6k
5
votes
6
replies
1.5k
views
DESeq2 w. pathway/network info as a prior knowledge
deseq2
pathway
ihw
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
guidobarzaghi
▴ 20
4
votes
4
replies
1.7k
views
How I interpret this plot from pathview
pathview
kegg
r
pathway
4.5 years ago • updated 4.4 years ago
AZ
▴ 30
1
vote
3
replies
640
views
Can CAMERA analyze just one particular pathway
pathway
ORA
limma
CAMERA
DGE
updated 8 months ago by
Gordon Smyth
50k • written 8 months ago by
manuelsokolov
• 0
2
votes
3
replies
1.0k
views
Accounting for Gene Set Overlaps in Goana and Kegga Results
limma
pathway
updated 4.7 years ago by
mikhael.manurung
▴ 270 • written 4.7 years ago by
Dario Strbenac
★ 1.5k
3
votes
3
replies
4.7k
views
Genelist input for ClusterProfiler
R
ClusterProfiler
Enrichment
Pathway
updated 10 months ago by
Guido Hooiveld
★ 3.9k • written 4.0 years ago by
t.b.kuipers
• 0
0
votes
3
replies
1.1k
views
extracting the genes associated with a specific pathway
pathway
KEGG
annotation
annotationhub
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
Bogdan
▴ 670
2
votes
2
replies
1.4k
views
paxtoolsr how to extract Modificationfeature related to a node
pathway
paxtools
9.5 years ago
Guido Leoni
▴ 200
0
votes
2
replies
731
views
Adjusting DESeq2 p-values through IHW using pathway information as covariate
IHW
deseq2
Pathway
updated 5.2 years ago by
Michael Love
41k • written 5.2 years ago by
guidobarzaghi
▴ 20
0
votes
1
reply
903
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
updated 6.1 years ago by
Martin Morgan
25k • written 6.1 years ago by
genomic8328
▴ 10
0
votes
1
reply
922
views
News:
SBGNview manuscript on bioRxiv now
pathway
SBGNview
Reactome
pathview
PANTHER
written 3.1 years ago by
Luo Weijun
★ 1.6k
2
votes
1
reply
979
views
GSEA generate genesets
pathway
KEGGREST
GSEA
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
MOHAMMAD
• 0
0
votes
0
replies
779
views
Help with mapping Kegg hsa01100 using pathview
kegg
pathway
pathview
5.2 years ago
Ahdee
▴ 50
13 results • Page
1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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