Showing : Preprocessing • reset
5
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meta analysis of microarrays of small sample sizes
preprocessing microarray genemeta
updated 7.5 years ago by ▴ 110 • written 7.5 years ago by ▴ 20
5
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5
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2.7k
views
Joint Preprocessing of RNA-Seq and Microarray datasets
preprocessing rnaseq microarray
updated 8.4 years ago by 50k • written 8.4 years ago by ▴ 30
4
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6
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558
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filtering lowly expressed reads
RNASeq limma DifferentialExpression Preprocessing
updated 11 weeks ago by 50k • written 3 months ago by • 0
4
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0
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1.7k
views
how to test for genes of interest?
Normalization Preprocessing limma Normalization Preprocessing limma
15.8 years ago Gordon Smyth 50k
3
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2
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2.9k
views
Nanostring ncounterdata - DESeq
RNASeq Normalization Preprocessing DESeq RNASeq Normalization Preprocessing DESeq
updated 12.8 years ago by ★ 3.7k • written 12.8 years ago by ▴ 20
3
votes
9
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1.9k
views
About the best use of frma for several GEO Series
frma normalization preprocessing
updated 7.3 years ago by ▴ 830 • written 7.4 years ago by ▴ 20
2
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2
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1.3k
views
AgilentG4502A_07_2 and AgilentG4502A_07_1
limma read.maimages normalization preprocessing
updated 6.4 years ago by 50k • written 6.4 years ago by ▴ 10
2
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2
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973
views
Preprocessing Issue
sva RNASeq Preprocessing Normalization BatchEffect
updated 3.2 years ago by ★ 4.0k • written 3.2 years ago by • 0
1
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4
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2.5k
views
How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray Preprocessing NimbleGen Normalization
written 17 months ago by • 0
1
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6
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2.2k
views
How to process Affymetrix HT HG-U133+ PM Array Plate
affy affymetrix microarrays preprocessing
updated 6.1 years ago by ★ 3.9k • written 6.1 years ago by ▴ 260
1
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1
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1.5k
views
Minfi RGChannelSet preprocessing error in assayDataElement
minfi preprocessing error
updated 7.6 years ago by ★ 6.5k • written 7.6 years ago by • 0
1
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0
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1.6k
views
Pre-processing of RNA sequencing data for GSVA
rnaseq rna-seq preprocessing gsva
7.7 years ago t.kuilman ▴ 170
0
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0
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887
views
handling scanalyze output format
Preprocessing convert Preprocessing convert
20.4 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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695
views
option rm.mask=TRUE in ReadAffy
Normalization Preprocessing hu6800 probe Normalization Preprocessing hu6800 probe
20.5 years ago t-kawai@hhc.eisai.co.jp ▴ 50
0
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1
reply
1.2k
views
HTqPCR useful for ChIP data ?
Preprocessing Clustering HTqPCR Preprocessing Clustering HTqPCR
updated 18 months ago by • 0 • written 12.3 years ago by ▴ 10
0
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0
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777
views
short course announcement
Microarray Normalization Preprocessing Classification Clustering Microarray Normalization
20.6 years ago mark@biostat.ucsf.edu ▴ 30
0
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0
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1.1k
views
RE: Bioconductor Digest, Vol 1, Issue 271
Normalization Preprocessing probe affy hexbin Normalization Preprocessing probe affy
21.1 years ago Huang, Cheng-Cheng NIH/NCI ▴ 30
0
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1
reply
2.2k
views
Recurrent error with Flashclust
Normalization Preprocessing probe Normalization Preprocessing probe
updated 13.2 years ago by ★ 3.0k • written 13.2 years ago by ▴ 340
0
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0
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last call for Boston bioc Training, 13-15 july, content revised
Annotation GO Preprocessing Clustering Yeast probe RSNPper biomaRt Annotation GO Yeast
17.8 years ago Vincent J. Carey, Jr. 6.7k
0
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1
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1.2k
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number of Replicates - Fold change vs Limma or Siggenes/SAM
Preprocessing gcrma Preprocessing gcrma
updated 19.9 years ago by ▴ 30 • written 19.9 years ago by ▴ 90
0
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0
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1.1k
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technical replicates (again!): a summary
Microarray GO Preprocessing Cancer vsn Microarray GO Preprocessing Cancer vsn
20.1 years ago Ramon Diaz ★ 1.1k
0
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0
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657
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[BioCTrain] announcement: training option Boston May 2003
Preprocessing Infrastructure oligo Preprocessing Infrastructure oligo
21.1 years ago Vincent Carey ▴ 10
0
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6
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1.7k
views
RMA vs VSN
Preprocessing vsn Preprocessing vsn
19.9 years ago Roger Vallejo ▴ 120
0
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0
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701
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Re: RMA vs VSN
Normalization Preprocessing Cancer probe affy vsn gcrma Normalization Preprocessing probe
19.9 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
962
views
[COURSE] Computational and Statistical Aspects of Microarray Analysis (III)
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
19.4 years ago stefano iacus ▴ 430
0
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0
replies
783
views
how to check reference quality?
Microarray Preprocessing Survival limma Microarray Preprocessing Survival limma
19.2 years ago Silvano Piazza ▴ 50
0
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0
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1.1k
views
[COURSE REMINDER] Computational and Statistical Aspects of Microarray Analysis
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
19.2 years ago stefano iacus ▴ 430
0
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3
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853
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suggestion : new object for exprSet
Preprocessing gcrma Preprocessing gcrma
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ★ 1.8k
0
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2
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901
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ANN: Bioconductor short course June 1-3 in Seattle
Preprocessing Visualization Cancer Preprocessing Visualization Cancer
19.1 years ago Seth Falcon ★ 7.4k
0
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0
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792
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Bioc Training: 21-23 July 2005, Boston
Annotation Preprocessing Visualization Annotation Preprocessing Visualization
18.9 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.0k
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Re: trouble installing "affy" package
Annotation GO Preprocessing Biobase affy affyPLM Annotation GO Preprocessing Biobase
20.1 years ago Debjani Bhowmick ▴ 30
0
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0
replies
973
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RE: Bioconductor Digest, Vol 13, Issue 27
Proteomics Normalization GO Preprocessing Clustering moe430a moe430b cdf probe affy GO
20.1 years ago Victor M Trevino-Alvarado ▴ 20
0
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0
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1.0k
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Bioconductor 1.1 Released
Preprocessing Cancer graph Preprocessing Cancer graph
21.4 years ago Jeff Gentry ★ 3.9k
0
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0
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762
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dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Microarray Normalization Preprocessing Cancer hgu133plus2 probe affy limma PROcess Cancer
17.2 years ago Henrik Bengtsson ★ 2.4k
0
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0
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1.1k
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Courses in Practical DNA Microarray Analysis 2006
Microarray Genetics Pathways Preprocessing Classification Cancer Microarray Genetics
18.3 years ago Wolfgang Huber ★ 13k
0
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0
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579
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preprocessing separately from each other
Preprocessing Preprocessing
18.6 years ago Mohammad Esad-Djou ▴ 520
0
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1
reply
1.0k
views
questions about Affy package from new user
Proteomics Normalization GO Preprocessing Clustering probe affy PROcess mscalib GO probe
updated 20.1 years ago by 65k • written 20.1 years ago by ▴ 210
0
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0
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809
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Wrapper of X-tandem into BioC for Proteomics
Preprocessing Preprocessing
18.6 years ago Simon Lin ▴ 210
0
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1
reply
904
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compare expression measures (and AffyComp)
Preprocessing affycomp Preprocessing affycomp
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 520
0
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1
reply
1.1k
views
GCRMA
Microarray Preprocessing gcrma BRAIN Microarray Preprocessing gcrma BRAIN
updated 18.3 years ago by ★ 2.0k • written 18.3 years ago by ▴ 20
0
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0
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1.1k
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COURSE: Computational and Statistical Aspects of Microarray Analysis (IV)
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
18.2 years ago stefano iacus ▴ 430
0
votes
3
replies
1.0k
views
ad hoc tools for affy tiling arrays?
Normalization Preprocessing gcrma Normalization Preprocessing gcrma
updated 18.2 years ago by ▴ 310 • written 18.2 years ago by ★ 6.5k
0
votes
0
replies
783
views
ANN: Introductory R and Bioconductor Mini Course , Seattle, April 12-14
Microarray Annotation Preprocessing Cancer Microarray Annotation Preprocessing Cancer
18.2 years ago Nianhua Li ▴ 870
0
votes
3
replies
2.6k
views
Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
18.2 years ago McGee, Monnie ▴ 300
0
votes
0
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1.0k
views
[COURSE] CSAMA'06, few places available
Microarray Proteomics Preprocessing Cancer Microarray Proteomics Preprocessing Cancer
18.0 years ago stefano iacus ▴ 430
0
votes
0
replies
575
views
How to create a MAList or ExprSet object from a matrix
Normalization Preprocessing probe Category Normalization Preprocessing probe Category
17.7 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
677
views
tasks of Background Correction and PM Corr =?iso-8859-15?q?ection_in_Prepro
Microarray Preprocessing probe Microarray Preprocessing probe
17.4 years ago Johannes Freudenberg ▴ 30
0
votes
0
replies
628
views
tasks of Background Correction and PM Correction in Preprocessing methods
Preprocessing Preprocessing
17.4 years ago Mohammad Esad-Djou ▴ 520
0
votes
0
replies
629
views
tasks of Background Correction and PM Correction in Preprocessing methods
Preprocessing Cancer Preprocessing Cancer
17.4 years ago Alvord, Greg DMS [Contr] ▴ 160
0
votes
3
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1.2k
views
LIMMA No residual using rmaPLM
Preprocessing affyPLM Preprocessing affyPLM
updated 18.6 years ago by 50k • written 18.6 years ago by ▴ 270
50 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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