Showing : Preprocessing • reset
5
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4
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2.4k
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meta analysis of microarrays of small sample sizes
preprocessing microarray genemeta
updated 9.3 years ago by ▴ 110 • written 9.3 years ago by ▴ 20
5
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5
replies
3.3k
views
Joint Preprocessing of RNA-Seq and Microarray datasets
preprocessing rnaseq microarray
updated 10.2 years ago by 53k • written 10.2 years ago by ▴ 30
4
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6
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1.8k
views
filtering lowly expressed reads
RNASeq limma DifferentialExpression Preprocessing
updated 23 months ago by 53k • written 2.0 years ago by • 0
4
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0
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2.0k
views
how to test for genes of interest?
Normalization Preprocessing limma Normalization Preprocessing limma
17.5 years ago Gordon Smyth 53k
3
votes
9
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2.9k
views
About the best use of frma for several GEO Series
frma normalization preprocessing
updated 9.1 years ago by ▴ 830 • written 9.1 years ago by ▴ 20
3
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2
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3.5k
views
Nanostring ncounterdata - DESeq
RNASeq Normalization Preprocessing DESeq RNASeq Normalization Preprocessing DESeq
updated 14.5 years ago by ★ 3.8k • written 14.5 years ago by ▴ 20
2
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2
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1.6k
views
Preprocessing Issue
sva RNASeq Preprocessing Normalization BatchEffect
updated 4.9 years ago by ★ 5.0k • written 4.9 years ago by • 0
1
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6
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3.0k
views
How to process Affymetrix HT HG-U133+ PM Array Plate
affy affymetrix microarrays preprocessing
updated 7.8 years ago by ★ 4.1k • written 7.8 years ago by ▴ 260
1
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2
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737
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affy::rma results doesn't match with ncbi website
affy Preprocessing Microarray
updated 10 months ago by 68k • written 10 months ago by • 0
1
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2
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1.8k
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AgilentG4502A_07_2 and AgilentG4502A_07_1
limma read.maimages normalization preprocessing
updated 8.1 years ago by 53k • written 8.1 years ago by • 0
1
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1
reply
2.1k
views
Minfi RGChannelSet preprocessing error in assayDataElement
minfi preprocessing error
updated 9.4 years ago by ★ 6.5k • written 9.4 years ago by • 0
1
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0
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2.1k
views
Pre-processing of RNA sequencing data for GSVA
rnaseq rna-seq preprocessing gsva
9.4 years ago t.kuilman ▴ 170
1
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4
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6.3k
views
How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray Preprocessing NimbleGen Normalization
written 3.2 years ago by • 0
0
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0
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1.2k
views
handling scanalyze output format
Preprocessing convert Preprocessing convert
22.2 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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920
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option rm.mask=TRUE in ReadAffy
Normalization Preprocessing hu6800 probe Normalization Preprocessing hu6800 probe
22.2 years ago t-kawai@hhc.eisai.co.jp ▴ 50
0
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1
reply
1.6k
views
HTqPCR useful for ChIP data ?
Preprocessing Clustering HTqPCR Preprocessing Clustering HTqPCR
updated 3.2 years ago by • 0 • written 14.1 years ago by ▴ 10
0
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0
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977
views
short course announcement
Microarray Normalization Preprocessing Classification Clustering Microarray Normalization
22.4 years ago mark@biostat.ucsf.edu ▴ 30
0
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0
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1.3k
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RE: Bioconductor Digest, Vol 1, Issue 271
Normalization Preprocessing probe affy hexbin Normalization Preprocessing probe affy
22.9 years ago Huang, Cheng-Cheng NIH/NCI ▴ 30
0
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1
reply
2.6k
views
Recurrent error with Flashclust
Normalization Preprocessing probe Normalization Preprocessing probe
updated 15.0 years ago by ★ 3.0k • written 15.0 years ago by ▴ 340
0
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0
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1.1k
views
last call for Boston bioc Training, 13-15 july, content revised
Annotation GO Preprocessing Clustering Yeast probe RSNPper biomaRt Annotation GO Yeast
19.6 years ago Vincent J. Carey, Jr. 6.7k
0
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1
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1.5k
views
number of Replicates - Fold change vs Limma or Siggenes/SAM
Preprocessing gcrma Preprocessing gcrma
updated 21.7 years ago by ▴ 30 • written 21.7 years ago by ▴ 90
0
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0
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1.4k
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technical replicates (again!): a summary
Microarray GO Preprocessing Cancer vsn Microarray GO Preprocessing Cancer vsn
21.8 years ago Ramon Diaz ★ 1.1k
0
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6
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2.5k
views
RMA vs VSN
Preprocessing vsn Preprocessing vsn
21.6 years ago Roger Vallejo ▴ 120
0
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0
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914
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Re: RMA vs VSN
Normalization Preprocessing Cancer probe affy vsn gcrma Normalization Preprocessing probe
21.6 years ago Wolfgang Huber ★ 13k
0
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0
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1.3k
views
[COURSE] Computational and Statistical Aspects of Microarray Analysis (III)
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
21.2 years ago stefano iacus ▴ 430
0
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0
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1.1k
views
how to check reference quality?
Microarray Preprocessing Survival limma Microarray Preprocessing Survival limma
21.0 years ago Silvano Piazza ▴ 50
0
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0
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1.4k
views
[COURSE REMINDER] Computational and Statistical Aspects of Microarray Analysis
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
21.0 years ago stefano iacus ▴ 430
0
votes
3
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1.2k
views
suggestion : new object for exprSet
Preprocessing gcrma Preprocessing gcrma
updated 20.9 years ago by ★ 7.4k • written 20.9 years ago by ★ 1.8k
0
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2
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1.2k
views
ANN: Bioconductor short course June 1-3 in Seattle
Preprocessing Visualization Cancer Preprocessing Visualization Cancer
20.8 years ago Seth Falcon ★ 7.4k
0
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0
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1.0k
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Bioc Training: 21-23 July 2005, Boston
Annotation Preprocessing Visualization Annotation Preprocessing Visualization
20.7 years ago Vincent J. Carey, Jr. 6.7k
0
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0
replies
895
views
[BioCTrain] announcement: training option Boston May 2003
Preprocessing Infrastructure oligo Preprocessing Infrastructure oligo
22.9 years ago Vincent Carey ▴ 10
0
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0
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1.2k
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Re: trouble installing "affy" package
Annotation GO Preprocessing Biobase affy affyPLM Annotation GO Preprocessing Biobase
21.8 years ago Debjani Bhowmick ▴ 30
0
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0
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1.2k
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RE: Bioconductor Digest, Vol 13, Issue 27
Proteomics Normalization GO Preprocessing Clustering moe430a moe430b cdf probe affy GO
21.9 years ago Victor M Trevino-Alvarado ▴ 20
0
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0
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1.3k
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Bioconductor 1.1 Released
Preprocessing Cancer graph Preprocessing Cancer graph
23.2 years ago Jeff Gentry ★ 3.9k
0
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0
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1.0k
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dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Microarray Normalization Preprocessing Cancer hgu133plus2 probe affy limma PROcess Cancer
19.0 years ago Henrik Bengtsson ★ 2.4k
0
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0
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1.4k
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Courses in Practical DNA Microarray Analysis 2006
Microarray Genetics Pathways Preprocessing Classification Cancer Microarray Genetics
20.1 years ago Wolfgang Huber ★ 13k
0
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0
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743
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preprocessing separately from each other
Preprocessing Preprocessing
20.3 years ago Mohammad Esad-Djou ▴ 520
0
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1
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1.3k
views
questions about Affy package from new user
Proteomics Normalization GO Preprocessing Clustering probe affy PROcess mscalib GO probe
updated 21.9 years ago by 68k • written 21.9 years ago by ▴ 210
0
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1
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1.2k
views
compare expression measures (and AffyComp)
Preprocessing affycomp Preprocessing affycomp
updated 20.1 years ago by 21k • written 20.1 years ago by ▴ 520
0
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1
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1.4k
views
GCRMA
Microarray Preprocessing gcrma BRAIN Microarray Preprocessing gcrma BRAIN
updated 20.0 years ago by ★ 2.0k • written 20.0 years ago by ▴ 20
0
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0
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1.4k
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COURSE: Computational and Statistical Aspects of Microarray Analysis (IV)
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
20.0 years ago stefano iacus ▴ 430
0
votes
3
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1.4k
views
ad hoc tools for affy tiling arrays?
Normalization Preprocessing gcrma Normalization Preprocessing gcrma
updated 20.0 years ago by ▴ 310 • written 20.0 years ago by ★ 6.5k
0
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0
replies
991
views
ANN: Introductory R and Bioconductor Mini Course , Seattle, April 12-14
Microarray Annotation Preprocessing Cancer Microarray Annotation Preprocessing Cancer
20.0 years ago Nianhua Li ▴ 870
0
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3
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3.2k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.9 years ago McGee, Monnie ▴ 300
0
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0
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1.3k
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[COURSE] CSAMA'06, few places available
Microarray Proteomics Preprocessing Cancer Microarray Proteomics Preprocessing Cancer
19.7 years ago stefano iacus ▴ 430
0
votes
0
replies
791
views
How to create a MAList or ExprSet object from a matrix
Normalization Preprocessing probe Category Normalization Preprocessing probe Category
19.5 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
909
views
tasks of Background Correction and PM Corr =?iso-8859-15?q?ection_in_Prepro
Microarray Preprocessing probe Microarray Preprocessing probe
19.2 years ago Johannes Freudenberg ▴ 30
0
votes
0
replies
859
views
tasks of Background Correction and PM Correction in Preprocessing methods
Preprocessing Preprocessing
19.2 years ago Mohammad Esad-Djou ▴ 520
0
votes
0
replies
875
views
tasks of Background Correction and PM Correction in Preprocessing methods
Preprocessing Cancer Preprocessing Cancer
19.2 years ago Alvord, Greg DMS [Contr] ▴ 160
0
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0
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1.0k
views
Wrapper of X-tandem into BioC for Proteomics
Preprocessing Preprocessing
20.4 years ago Simon Lin ▴ 210
175 results • Page 1 of 4
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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…
Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0
Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…
Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0
thank you very much. https://www.biostars.org/p/9617271/
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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