Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Qsea
•
reset
0
votes
0
replies
309
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
11 months ago
User3088
• 0
0
votes
1
reply
692
views
QSEA:Error in h(simpleError(msg, call))
qsea
16 months ago
kf
• 0
1
vote
2
replies
709
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 20 months ago by
Researcher
▴ 10
0
votes
2
replies
816
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
23 months ago • updated 11 months ago
User3088
• 0
9
votes
18
replies
4.9k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 2.1 years ago by
Matthias Lienhard
▴ 280 • written 8.8 years ago by
justinburgener
▴ 20
2
votes
1
reply
954
views
QSEA: normalisation >> sequencing preference
qsea
updated 2.9 years ago by
Matthias Lienhard
▴ 280 • written 2.9 years ago by
a.riediger
▴ 20
1
vote
1
reply
1.4k
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 2.9 years ago by
Matthias Lienhard
▴ 280 • written 2.9 years ago by
a.riediger
▴ 20
1
vote
4
replies
2.0k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 3.3 years ago by
Simon Pearce
• 0 • written 3.4 years ago by
a.riediger
▴ 20
0
votes
2
replies
1.4k
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 3.5 years ago by
Simon Pearce
• 0 • written 3.5 years ago by
Marianna
▴ 20
3
votes
8
replies
2.2k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
4.6 years ago
rtrivedi1
▴ 10
7
votes
9
replies
2.8k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
4.7 years ago • updated 4.6 years ago
rtrivedi1
▴ 10
0
votes
1
reply
1.1k
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 4.7 years ago by
Matthias Lienhard
▴ 280 • written 4.9 years ago by
el466
• 0
1
vote
1
reply
1.5k
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 5.1 years ago by
Matthias Lienhard
▴ 280 • written 5.1 years ago by
mbk0asis
• 0
0
votes
2
replies
1.2k
views
Qsea - plotCoverage
Qsea
updated 5.8 years ago by
Matthias Lienhard
▴ 280 • written 5.8 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.6k
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 5.9 years ago by
Matthias Lienhard
▴ 280 • written 5.9 years ago by
Simon Pearce
• 0
0
votes
1
reply
1.1k
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 5.9 years ago by
Matthias Lienhard
▴ 280 • written 5.9 years ago by
gaurav4thareja
▴ 20
1
vote
4
replies
2.3k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 12 months ago by
Lukas
▴ 20 • written 6.4 years ago by
LNathanson
• 0
0
votes
0
replies
1.5k
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
7.3 years ago
saripalligautam86
▴ 10
0
votes
1
reply
1.2k
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 7.6 years ago by
Matthias Lienhard
▴ 280 • written 7.7 years ago by
apt.university
• 0
0
votes
8
replies
2.3k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 7.7 years ago by
Matthias Lienhard
▴ 280 • written 7.7 years ago by
wildist
• 0
0
votes
3
replies
1.7k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 7.9 years ago by
Matthias Lienhard
▴ 280 • written 7.9 years ago by
geekyvt
• 0
1
vote
2
replies
1.4k
views
QSEA: Error while addLibraryFactors
QSEA
updated 7.9 years ago by
Matthias Lienhard
▴ 280 • written 7.9 years ago by
geekyvt
• 0
1
vote
3
replies
1.8k
views
QSEA Error while loading the bam files
qsea
updated 7.9 years ago by
Matthias Lienhard
▴ 280 • written 7.9 years ago by
geekyvt
• 0
23 results • Page
1 of 1
Recent ...
Replies
Comment: Bile acid analysis with limpa
by
ATpoint
★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help
by
Jeremy
• 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Gordon Smyth
53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
chp265
• 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2
by
Michael Love
43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Awards
• All
Popular Question
to
ATpoint
★ 5.0k
Popular Question
to
Martin Morgan
25k
Teacher
to
Michael Love
43k
Popular Question
to
A
• 0
Popular Question
to
Lluís Revilla Sancho
▴ 760
Locations
• All
United States,
13 minutes ago
United States,
28 minutes ago
United States,
32 minutes ago
United States,
46 minutes ago
United States,
47 minutes ago
Traffic: 1002 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6