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QualityControl
•
reset
0
votes
0
replies
939
views
getsex function error.
QualityControl
methylationArrayAnalysis
2.2 years ago
zusman
• 0
0
votes
1
reply
1.0k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 3.3 years ago by
Michael Stadler
▴ 350 • written 3.3 years ago by
h.kozlowski
• 0
0
votes
0
replies
611
views
AffyExpress choose relative path folder
folder
quality
QualityControl
AffyExpress
3.4 years ago
bastien_chassagnol
• 0
0
votes
2
replies
1.4k
views
Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc
qualitycontrol
arrayqualitymetrics
mouse gene st 2.0
affymetrix
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
n.lu
• 0
3
votes
2
replies
909
views
Q score filter to each base in QualityScaledDNAStringSet
qualitycontrol
updated 7.2 years ago by
Mike Smith
★ 6.5k • written 7.2 years ago by
XIA.PAN
▴ 20
0
votes
0
replies
1.0k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.2 years ago
chelsey.ju
• 0
2
votes
0
replies
1.1k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
7.5 years ago
Bouzid.a
▴ 20
1
vote
14
replies
3.7k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 8.0 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.0 years ago by
Lna
• 0
2
votes
2
replies
1.5k
views
Manually compute NUSE score
NUSE
qualitycontrol
microarray
updated 8.3 years ago by
Diego Diez
▴ 760 • written 8.3 years ago by
jacorvar
▴ 40
4
votes
2
replies
2.4k
views
Quality control on RNA-Seq (level 3) data from TCGA
rna-seq
GC-Content
qualitycontrol
updated 8.5 years ago by
Matthew McCormack
▴ 180 • written 8.5 years ago by
NS
▴ 60
1
vote
2
replies
1.7k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma
affy
probe
qualitycontrol
design and contrast matrix
updated 9.3 years ago by
Gordon Smyth
50k • written 9.4 years ago by
alakatos
▴ 130
0
votes
1
reply
1.2k
views
read.maimages problem under sun ?
Microarray
OneChannel
TwoChannel
DifferentialExpression
Preprocessing
QualityControl
affy
17.0 years ago
Amin Moghaddasi
▴ 130
12 results • Page
1 of 1
Recent ...
Replies
Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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Michael Love
42k
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to
Haibo Liu
• 0
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to
HS
▴ 10
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DevelopingHippo
• 0
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Robert Castelo
★ 3.3k
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