Bioconductor RNAseq123

Showing : RNAseq123 • reset

vote

replies

360

views

RNAseq123

4 months ago Lluís Revilla Sancho ▴ 730

vote

1.6k

views

RNAseq123

updated 7 months ago by difraiadomenico • 0 • written 3.5 years ago by demirkalecy ▴ 10

vote

514

views

RNASeqData RNAseq123

updated 9 months ago by ATpoint ★ 4.4k • written 9 months ago by kaurprab • 0

votes

replies

729

views

DESeq2 RNAseq123

19 months ago fatemeh.peimani • 0

votes

replies

1.1k

views

DESeq2 RNAseq123 rnaseq deseq2 metatranscriptomic

updated 20 months ago by Michael Love 42k • written 21 months ago by irish.prg • 0

vote

replies

4.0k

views

RNAseq123

21 months ago afsanarupa1 • 0

votes

replies

1.2k

views

edgeR RNAseq123

updated 21 months ago by Gordon Smyth 51k • written 22 months ago by Istvan Albert ▴ 50

vote

replies

5.0k

views

RNAseq123

written 3.7 years ago by mmicky5050 • 0

votes

1.8k

views

RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 22 months ago by James W. MacDonald 67k • written 22 months ago by Mohamed ▴ 30

vote

862

views

RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 2.0 years ago by ATpoint ★ 4.4k • written 2.0 years ago by Mohamed ▴ 30

votes

replies

669

views

RNAseq123

2.2 years ago Mohamed ▴ 30

votes

1.2k

views

RNAseq123 Rna

updated 2.2 years ago by Gordon Smyth 51k • written 2.2 years ago by Mikołaj Mierzejewski • 0

votes

replies

3.0k

views

PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.4 years ago Alan • 0

votes

929

views

snpeff python tophat r RNAseq123

updated 3.1 years ago by Kevin Blighe ★ 4.0k • written 3.1 years ago by kusum • 0

votes

replies

618

views

CircularRNA RNASeq RNAseq123

3.6 years ago rpokhre2 • 0

votes

replies

4.7k

views

voom htseq edgeR limma RNASeq123

updated 5.7 years ago by Gordon Smyth 51k • written 7.3 years ago by wd ▴ 30

16 results • Page 1 of 1

Recent ...

Replies

Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus by James W. MacDonald 67k

I don't know what you mean by 'a pairwise comparison', but the two analyses are equivalent, except in the second analysis you want to do `t…

Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th by James W. MacDonald 67k

If you want to comment on an answer, please choose ADD COMMENT rather than ADD ANSWER, since you are not in fact adding an answer. ``` uni…

Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th by Fatima • 0

In fact, I used the BP ontology and I am using gene symbols rather than identifiers (IDs). Is there a way to verify how many genes from the…

Comment: When doing differential methylation using the sesame package, seems to only go by James W. MacDonald 67k

In the other thread I pointed out that filtering on the p-value AND the logFC is fraught because you are mixing population parameter estima…

Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th by James W. MacDonald 67k

The way you are doing it includes all three ontologies. Unless you used "ALL" as the ontology, the number of genes annotated should be less…

Votes

Answer: Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjus

Answer: clusterProfiler: BgRatio N value does not match the size of the gene universe th

Answer: object 'hdac_targets' not found

Answer: In the sesame package, what does the estimate output mean from testEnrichment()

Awards • All

Scholar to James W. MacDonald 67k

Teacher to Aaron Lun ★ 28k

Popular Question to Robert Castelo ★ 3.4k