Showing : Rna • reset
0
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2
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447
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 5 months ago by ★ 2.0k • written 5 months ago by • 0
3
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6
replies
1.1k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2 edgeR RNA limma Normalization
10 months ago Sara • 0
0
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0
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311
views
Correct GFF3 translation for FeatureCounts
RNASeq FeatureCounts Rna
11 months ago rridley3 • 0
1
vote
1
reply
413
views
Confused about design for RNA seq experiment
RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign
updated 12 months ago by ★ 3.4k • written 12 months ago by ▴ 20
0
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0
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500
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Job: Scientist/Senior Scientist – Bioinformatics / Computational Biology
MassSpectrometryData RNA DifferentialExpression
13 months ago António Miguel de Jesus Domingues ▴ 490
0
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2
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586
views
Rsubread align --R session aborts
RNA Alignment Rsubread
14 months ago • updated 13 months ago sreekalasn • 0
2
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1
reply
674
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123 Rna
updated 15 months ago by 48k • written 15 months ago by • 0
1
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2
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1.1k
views
Is it necessary to standardize Combat in R?
RNA Combat sva R
16 months ago takemoto • 0
1
vote
1
reply
559
views
Description of the headers obtained from the Eligos2 output
methylation RNA native epitranscriptomics
updated 19 months ago by ▴ 90 • written 19 months ago by ▴ 10
0
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1
reply
650
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 21 months ago by ★ 3.4k • written 21 months ago by • 0
0
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0
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458
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Cross-cultivar RNA-seq analysis
RNA Normalization
2.4 years ago nancy • 0
0
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4
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1.0k
views
Fitting a continuous variable with batch effect using Limma. Also a question about normalization.
limma edgeR rna
2.5 years ago Nirad • 0
0
votes
3
replies
1.6k
views
Pearson correlation between gene expression and phenotype
edgeR RNASeq
updated 2.9 years ago by 48k • written 2.9 years ago by • 0
4
votes
3
replies
1.5k
views
How to resolve NAs when annotating a diff gene list with org.Hs.eg.db terms?
annotation rna
updated 3.0 years ago by 63k • written 3.0 years ago by ▴ 20
2
votes
7
replies
966
views
Affycoretools package, HTA 2.0 annotation for non-coding RNA
affy rna hta2.0 r
updated 3.3 years ago by 63k • written 3.3 years ago by • 0
1
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1
reply
582
views
How to interpret coefficients of time course modeled data with DESeq2?
deseq2 RNA
updated 3.4 years ago by 40k • written 3.4 years ago by • 0
0
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6
replies
913
views
Bizarre Dispersion Plots
deseq2 RNA RNASeq
updated 3.6 years ago by 40k • written 3.6 years ago by • 0
0
votes
0
replies
640
views
Job: Post-doctoral Fellowship at BC Cancer Research Center, Vancouver BC
single cell RNA Data analysis Bioinformatics Job
4.2 years ago jmaanaki • 0
1
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1
reply
1.0k
views
how to filter genes in significant module?
RNA WGCNA filter
4.2 years ago modarzi ▴ 10
0
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2
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716
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DESeq and checkFullRank(modelMatrix)
RNA DESeq2
updated 4.4 years ago by 40k • written 4.4 years ago by ▴ 10
2
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1
reply
654
views
DESeq2 statistic and design
deseq2 RNA
updated 4.5 years ago by 40k • written 4.5 years ago by ▴ 10
5
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5
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1.1k
views
Association analysis between gene expression and Phenotype
rna singlecell limma
updated 4.5 years ago by ★ 28k • written 4.5 years ago by ▴ 20
2
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3
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887
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Number and percent of mapped reads from RNA seq analysis.
rna-seq rna
updated 4.5 years ago by 13k • written 4.5 years ago by ▴ 20
1
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0
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757
views
Job: 1 Computational Biologist and 1 Molecular Biologist
computational biology molecular biology RNA r-loop ncRNA Job
4.9 years ago l.brown ▴ 10
0
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0
replies
744
views
R code for finding wobble/redundant positions in an RNA string
r code rna wobble
5.6 years ago fawazfebin ▴ 60
0
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1
reply
817
views
Time series comparison with DESEQ2
RNA rnaseq deseq2
updated 6.1 years ago by 40k • written 6.1 years ago by ▴ 20
0
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1
reply
1.3k
views
RNA sequencing analysis for time point experiment using DeSeq2
deseq2 RNA rnaseq
updated 6.2 years ago by 40k • written 6.2 years ago by ▴ 20
1
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1
reply
1.0k
views
Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 6.3 years ago by ▴ 410 • written 6.4 years ago by ▴ 30
5
votes
4
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1.1k
views
Experiment design contrasts any time edgeR
DGE rnaseq RNA edger
updated 6.4 years ago by • 0 • written 6.4 years ago by ▴ 40
3
votes
6
replies
1.7k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 6.4 years ago by 63k • written 6.4 years ago by ▴ 20
6
votes
5
replies
3.3k
views
Clustering differential expression results from voomWithQualityWeights
RNA limma rsem edgeR
updated 6.5 years ago by 48k • written 6.5 years ago by ▴ 20
0
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0
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1.3k
views
Finding candidate binding sites for RNA binding proteins in R
R bioconductor RNA mRNA RNA binding proteins
6.5 years ago Walter F. Baumann ▴ 10
3
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1
reply
1.5k
views
Targeted RNASeq/CaptureSeq DE Analysis
EdgeR deseq2 RNA differential expression
updated 7.0 years ago by ★ 28k • written 7.0 years ago by • 0
0
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4
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4.7k
views
RNAseq Adjusting for Covariates?
RNA rnaseq Covariate adjustment deseq
updated 7.6 years ago by 40k • written 7.6 years ago by • 0
0
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2
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1.2k
views
Normalizzation indipentent data from RNAAeq experiment
rna normalization
9.0 years ago aristotele_m ▴ 30
35 results • Page 1 of 1
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Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by Mike Smith ★ 6.1k
I'll echo James' suggestion to use the GRCh37 mirror. Most mirrors only have a guaranteed lifetime of 5 years from Ensembl, although it se…
Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k
I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…
Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k
It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…
Comment: ComBat_seq function in sva package does not return a matrix by Federico ▴ 10
Thanks for your help, problem solved :)
Answer: ComBat_seq function in sva package does not return a matrix by ATpoint ★ 3.4k
That happens if your `x` is a data.frame rather than a matrix. It is listed under the Q&A section in https://github.com/zhangyuqing/ComBat-…
Votes
ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
Answer: ComBat_seq function in sva package does not return a matrix
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