Bioconductor RNAseq123

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4.4k

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voom htseq edgeR limma RNASeq123

updated 5.3 years ago by Gordon Smyth 50k • written 6.9 years ago by wd ▴ 30

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4.4k

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RNAseq123

written 3.3 years ago by mmicky5050 • 0

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841

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DESeq2 RNAseq123 rnaseq deseq2 metatranscriptomic

updated 16 months ago by Michael Love 42k • written 16 months ago by irish.prg • 0

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edgeR RNAseq123

updated 17 months ago by Gordon Smyth 50k • written 17 months ago by Istvan Albert ▴ 50

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817

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snpeff python tophat r RNAseq123

updated 2.8 years ago by Kevin Blighe ★ 3.9k • written 2.8 years ago by kusum • 0

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195

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RNAseq123

18 days ago • updated 3 days ago Lluís Revilla Sancho ▴ 730

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1.5k

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RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 18 months ago by James W. MacDonald 65k • written 18 months ago by Mohamed ▴ 30

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1.0k

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RNAseq123 Rna

updated 23 months ago by Gordon Smyth 50k • written 23 months ago by Mikołaj Mierzejewski • 0

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550

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DESeq2 RNAseq123

15 months ago • updated 14 months ago fatemeh.peimani • 0

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3.2k

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RNAseq123

17 months ago afsanarupa1 • 0

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342

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RNASeqData RNAseq123

updated 5 months ago by ATpoint ★ 4.1k • written 5 months ago by kaurprab • 0

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2.5k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

2.1 years ago Alan • 0

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1.4k

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RNAseq123

updated 3 months ago by difraiadomenico • 0 • written 3.2 years ago by demirkalecy ▴ 10

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554

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RNAseq123

21 months ago Mohamed ▴ 30

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512

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CircularRNA RNASeq RNAseq123

3.2 years ago rpokhre2 • 0

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716

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 20 months ago by ATpoint ★ 4.1k • written 20 months ago by Mohamed ▴ 30

16 results • Page 1 of 1

Recent ...

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Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0

Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…

Answer: Differential gene expression analysis results by ATpoint ★ 4.1k

Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…

Comment: deseq2 results by sajadahmad41454 • 0

thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.

Comment: deseq2 results by swbarnes2 ★ 1.4k

It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…

Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0

Thank you very much, Gordon. I'll give voomLmFit a go!

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Comment: deseq2 results

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie

Answer: Extremely small p-values using Limma for proteomic data

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