Bioconductor RNAseqRData

Showing : RNAseqRData • reset

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1.1k

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microRNA gene RNASeqRData edgeR geneontology

2.1 years ago faiza • 0

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853

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find RNASeqRData

updated 2.1 years ago by ATpoint ★ 4.5k • written 2.1 years ago by yuhang • 0

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1.9k

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RNASeqRData TPM

updated 2.2 years ago by ATpoint ★ 4.5k • written 2.2 years ago by prashali.bansal ▴ 10

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593

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RNASeq RNASeqData RNASeqRData

2.2 years ago marymshahi2021 • 0

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751

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RNAseqRData DeSeq2

updated 2.6 years ago by Michael Love 42k • written 2.6 years ago by Hannah • 0

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3.9k

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RNASeqRData

updated 2.7 years ago by Michael Love 42k • written 2.7 years ago by beslinail • 0

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971

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RNASeqRData edgeR RNASeqR RNASeqData

updated 2.7 years ago by Gordon Smyth 51k • written 2.7 years ago by vikycairoli • 0

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1.1k

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RNASeqRData combat_Seq BatchEffect

3.1 years ago • updated 2.9 years ago zeegzaag • 0

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1.0k

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RNASeqRData limma RNASeq RNASeqR

updated 3.6 years ago by Gordon Smyth 51k • written 3.6 years ago by Rita • 0

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3.1k

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RNASeqRData GO

3.7 years ago Wuschel ▴ 10

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901

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RNAinteract rnaseqGene RNASeqRData rnaseqcomp

3.8 years ago Bogdan ▴ 670

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1.3k

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Deseq2 RNASeqRData unbalancedsamplesize

updated 2.5 years ago by Michael Love 42k • written 3.8 years ago by Cihat • 0

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2.4k

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RiboProfiling DESeq2 Bioconductor RNASeqRData

updated 2.1 years ago by Kevin Blighe ★ 4.0k • written 3.8 years ago by Taufiq • 0

13 results • Page 1 of 1

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Answer: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…

Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Votes

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20