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RNAseqRData
•
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1
vote
4
replies
1.6k
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RNA-seq analysis between a wildtype vs a double microRNA kockout mouse brain
microRNA
gene
RNASeqRData
edgeR
geneontology
3.2 years ago
faiza
• 0
1
vote
3
replies
1.2k
views
What should I do with RNA-Seq data to get a gene that work?
find
RNASeqRData
updated 3.2 years ago by
ATpoint
★ 5.0k • written 3.2 years ago by
yuhang
• 0
1
vote
4
replies
2.6k
views
merge TPM values for same geneID
RNASeqRData
TPM
updated 3.3 years ago by
ATpoint
★ 5.0k • written 3.3 years ago by
prashali.bansal
▴ 10
0
votes
0
replies
770
views
how to create PHENO_DATA
RNASeq
RNASeqData
RNASeqRData
3.3 years ago
marymshahi2021
• 0
0
votes
1
reply
994
views
DeSeq2 timecourse analysis
RNAseqRData
DeSeq2
updated 3.8 years ago by
Michael Love
43k • written 3.8 years ago by
Hannah
• 0
0
votes
17
replies
4.9k
views
results(dds) error: couldn't find results. you should first run DESeq()
RNASeqRData
updated 3.8 years ago by
Michael Love
43k • written 3.9 years ago by
beslinail
• 0
1
vote
1
reply
1.2k
views
edgeR for SDE analysis
RNASeqRData
edgeR
RNASeqR
RNASeqData
updated 3.9 years ago by
Gordon Smyth
53k • written 3.9 years ago by
vikycairoli
• 0
1
vote
2
replies
1.4k
views
Is 100K genes too many to run ComBat_seq on?
RNASeqRData
combat_Seq
BatchEffect
4.3 years ago • updated 4.0 years ago
zeegzaag
• 0
0
votes
1
reply
1.3k
views
Limma Voom Design and Contrast Matrix- Can my parameter also be a factor?
RNASeqRData
limma
RNASeq
RNASeqR
updated 4.8 years ago by
Gordon Smyth
53k • written 4.8 years ago by
Rita
• 0
2
votes
2
replies
3.9k
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
4.9 years ago
Wuschel
▴ 10
0
votes
0
replies
1.2k
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
4.9 years ago
Bogdan
▴ 670
4
votes
4
replies
1.7k
views
DEseq2: working with unbalanced number of sample in tumor study?
Deseq2
RNASeqRData
unbalancedsamplesize
updated 3.6 years ago by
Michael Love
43k • written 4.9 years ago by
Cihat
• 0
1
vote
5
replies
3.0k
views
How can I use bioconductor and Deseq2 in linux ubuntu 18
RiboProfiling
DESeq2
Bioconductor
RNASeqRData
updated 3.2 years ago by
Kevin Blighe
★ 4.0k • written 5.0 years ago by
Taufiq
• 0
13 results • Page
1 of 1
Recent ...
Replies
Answer: Incosistencies in buildSNNGraph() function
by
stephengriffin04
• 0
Thank you for shedding light on the inconsistencies in the `buildSNNGraph()` function. It's crucial for users to address these issues as th…
Answer: A problem occurs when running the monocle2
by
stephengriffin04
• 0
I totally feel you on the monocle2 issues! I had a similar run-in with unexpected errors last week that had me pulling my hair out. Did you…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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